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Specific antibodies are necessary for cellular and tissue expression, biochemical, and functional analyses of protein complexes. However, generating a specific antibody is often time-consuming and effort-intensive. The epitope tagging of an endogenous protein at an appropriate position can overcome this problem. Here, we investigated epitope tag position using AlphaFold2 protein structure prediction and developed Flag/DYKDDDDK tag knock-in CaMKIIα and CaMKIIβ mice by combining CRISPR-Cas9 genome editing with electroporation (-GONAD). With -GONAD, it is possible to insert a small fragment of up to 200 bp into the genome of the target gene, enabling efficient and convenient tagging of a small epitope. Experiments with commercially available anti-Flag antibodies could readily detect endogenous CaMKIIα and β proteins by Western blotting, immunoprecipitation, and immunohistochemistry. Our data demonstrated that the generation of Flag/DYKDDDDK tag knock-in mice by -GONAD is a useful and convenient choice, especially if specific antibodies are unavailable.
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http://dx.doi.org/10.3390/ijms231911915 | DOI Listing |
Mol Psychiatry
August 2025
State Key Laboratory of Reproductive Medicine and Offsprings Health, Key Laboratory for Pathogen Infection and Control of Jiangsu province, Center for Global Health, Nanjing Medical University, Nanjing, 211166, China.
Autism Spectrum Disorder (ASD) is a neurodevelopmental condition increasingly linked to microbiota-gut-brain axis dysregulation, yet the causal microbial mediators and molecular mechanisms remain elusive. Based on our previously published ASD cohort, we discovered that depletion of Lactobacillus species in children with ASD correlates with exacerbated gastrointestinal symptoms and social deficits. Maternal immune activation (MIA) during pregnancy has been established as a critical environmental risk factor for ASD.
View Article and Find Full Text PDFMicroPubl Biol
July 2025
School of Biomolecular and Biomedical Science, University College Dublin, Dublin, Ireland.
CRISPR/Cas9 genome editing has become an important and routine method in research to generate new mutants and endogenously tag genes. One complication of CRISPR experiments is that the efficiency of single-guide RNA sequences can vary dramatically One solution to this problem is to create an intermediate entry strain using the efficient and well-characterised guide RNA sequence. This "d10 entry strain" can then be used to generate your knock-in of interest.
View Article and Find Full Text PDFbioRxiv
June 2025
School of Biomolecular and Biomedical Science, University College Dublin, Dublin, Ireland.
CRISPR/Cas9 genome editing has become an important and routine method in research to generate new mutants and endogenously tag genes. One complication of CRISPR experiments is that the efficiency of single-guide RNA sequences can vary dramatically. One solution to this problem is to create an intermediate entry strain using the efficient and well-characterised guide RNA sequence.
View Article and Find Full Text PDFNeuromodulators such as the monoamines are known to differ from classical neurotransmitters like glutamate in the time scale of signaling due to activation of slower G protein-coupled receptors. Recent work has suggested that the mode of release also differs between classical and modulatory transmitters. Although many components of neurotransmitter release machinery have been identified, we still understand little about the mechanisms responsible for differences in release.
View Article and Find Full Text PDFbioRxiv
May 2025
Department of Biology, University of Virginia, Charlottesville, VA 22904, USA.
is a powerful model for dissecting biological processes . In particular, the ease of generating targeted knock-in alleles makes it possible to visualize and functionally modify endogenous proteins to gain fundamental insights into biological mechanisms. Methods for genome engineering typically utilize selectable markers, visual screening for fluorescence, or PCR genotyping to identify successfully edited animals.
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