Machine-learning effective many-body potentials for anisotropic particles using orientation-dependent symmetry functions.

J Chem Phys

Soft Condensed Matter, Debye Institute for Nanomaterials Science, Utrecht University, Princetonplein 5, 3584 CC Utrecht, The Netherlands.

Published: July 2022


Category Ranking

98%

Total Visits

921

Avg Visit Duration

2 minutes

Citations

20

Article Abstract

Spherically symmetric atom-centered descriptors of atomic environments have been widely used for constructing potential or free energy surfaces of atomistic and colloidal systems and to characterize local structures using machine learning techniques. However, when particle shapes are non-spherical, as in the case of rods and ellipsoids, standard spherically symmetric structure functions alone produce imprecise descriptions of local environments. In order to account for the effects of orientation, we introduce two- and three-body orientation-dependent particle-centered descriptors for systems composed of rod-like particles. To demonstrate the suitability of the proposed functions, we use an efficient feature selection scheme and simple linear regression to construct coarse-grained many-body interaction potentials for computationally efficient simulations of model systems consisting of colloidal particles with an anisotropic shape: mixtures of colloidal rods and non-adsorbing polymer coils, hard rods enclosed by an elastic microgel shell, and ligand-stabilized nanorods. We validate the machine-learning (ML) effective many-body potentials based on orientation-dependent symmetry functions by using them in direct coexistence simulations to map out the phase behavior of colloidal rods and non-adsorbing polymer coils. We find good agreement with the results obtained from simulations of the true binary mixture, demonstrating that the effective interactions are well described by the orientation-dependent ML potentials.

Download full-text PDF

Source
http://dx.doi.org/10.1063/5.0091319DOI Listing

Publication Analysis

Top Keywords

machine-learning effective
8
effective many-body
8
many-body potentials
8
orientation-dependent symmetry
8
symmetry functions
8
spherically symmetric
8
colloidal rods
8
rods non-adsorbing
8
non-adsorbing polymer
8
polymer coils
8

Similar Publications

To address the technical challenges associated with determining the chronological order of overlapping stamps and textual content in forensic document examination, this study proposes a novel non-destructive method that integrates hyperspectral imaging (HSI) with convolutional neural networks (CNNs). A multi-type cross-sequence dataset was constructed, comprising 60 samples of handwriting-stamp sequences and 20 samples of printed text-stamp sequences, all subjected to six months of natural aging. Spectral responses were collected across the 400-1000 nm range in the overlapping regions.

View Article and Find Full Text PDF

Oral cancer is a major global health burden, ranking sixth in prevalence, with oral squamous cell carcinoma (OSCC) being the most common type. Importantly, OSCC is often diagnosed at late stages, underscoring the need for innovative methods for early detection. The oral microbiome, an active microbial community within the oral cavity, holds promise as a biomarker for the prediction and progression of cancer.

View Article and Find Full Text PDF

Machine learning (ML) and deep learning (DL) methodologies have significantly advanced drug discovery and design in several aspects. Additionally, the integration of structure-based data has proven to successfully support and improve the models' predictions. Indeed, we previously demonstrated that combining molecular dynamics (MD)-derived descriptors with ML models allows to effectively classify kinase ligands as allosteric or orthosteric.

View Article and Find Full Text PDF

Background: A clear understanding of minimal clinically important difference (MCID) and substantial clinical benefit (SCB) is essential for effectively implementing patient-reported outcome measurements (PROMs) as a performance measure for total knee arthroplasty (TKA). Since not achieving MCID and SCB may reflect suboptimal surgical benefit, the primary aim of this study was to use machine learning to predict patients who may not achieve the threshold-based outcomes (i.e.

View Article and Find Full Text PDF

Arthroplasty surgery is a common and successful end-stage intervention for advanced osteoarthritis. Yet, postoperative outcomes vary significantly among patients, leading to a plethora of measures and associated measurement approaches to monitor patient outcomes. Traditional approaches rely heavily on patient-reported outcome measures (PROMs), which are widely used, but often lack sensitivity to detect function changes (e.

View Article and Find Full Text PDF