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The polychaete lives exclusively on the walls of deep-sea hydrothermal chimneys along the East Pacific Rise (EPR), and displays specific adaptations to withstand the high temperatures and hypoxia associated with this highly variable habitat. Previous studies have revealed the existence of a balanced polymorphism on the enzyme phosphoglucomutase associated with thermal variations, where allozymes 90 and 100 exhibit different optimal activities and thermostabilities. Exploration of the mutational landscape of phosphoglucomutase 1 revealed the maintenance of four highly divergent allelic lineages encoding the three most frequent electromorphs over the geographic range of . This polymorphism is only governed by two linked amino acid replacements, located in exon 3 (E155Q and E190Q). A two-niche model of selection, including 'cold' and 'hot' conditions, represents the most likely scenario for the long-term persistence of these isoforms. Using directed mutagenesis and the expression of the three recombinant variants allowed us to test the additive effect of these two mutations on the biochemical properties of this enzyme. Our results are coherent with those previously obtained from native proteins, and reveal a thermodynamic trade-off between protein thermostability and catalysis, which is likely to have maintained these functional phenotypes prior to the geographic separation of populations across the Equator about 1.2 million years ago.
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http://dx.doi.org/10.3390/genes13020206 | DOI Listing |
Cell Chem Biol
September 2025
iHuman Institute, ShanghaiTech University, Shanghai 201210, China; School of Life Science and Technology, ShanghaiTech University, Shanghai 201210, China; Department of Integrative Structural and Computational Biology, Scripps Research, La Jolla, CA 92037, USA; Institute of Molecular Biology and Bio
Balanced or biased G protein and arrestin transmembrane signaling by the adenosine 2A receptor (AAR) is related to ligand-induced allosterically triggered variation of structural dynamics in the intracellular half of the transmembrane domain (TMD). F-nuclear magnetic resonance (NMR) of a network of genetically introduced meta-trifluoromethyl-L-phenylalanine (mtfF) probes in the core of the TMD revealed signaling-related structure rearrangements leading from the extracellular orthosteric drug-binding site to the G protein and arrestin contacts on the intracellular surface. The key element in this structural basis of signal transfer is dynamic loss of structural order in the intracellular half of the TMD, as manifested by local polymorphisms and associated rate processes within the molecular architecture determined previously by X-ray crystallography.
View Article and Find Full Text PDFMedicine (Baltimore)
September 2025
Department of Cardiology, The Second Affiliated Hospital of Zunyi Medical University, Zunyi, Guizhou Province, China.
The relationship between dietary habits, including the consumption of eggs, dairy products, and sugar, and the development of disease is well-established. However, further investigation is required to elucidate the precise associations between these dietary habits and cardiovascular disease (CVD). The objective of this study was to analyze existing genome-wide association studies in order to identify causal relationships between dietary habits and CVD.
View Article and Find Full Text PDFJ Anim Ecol
September 2025
School of Medical, Molecular and Forensic Sciences, Murdoch University, Perth, Western Australia, Australia.
Ticks are ectoparasites of major medical, veterinary and ecological importance, transmitting a wide range of pathogens to humans, companion animals and livestock. Understanding the population structure of ticks is essential for uncovering patterns of pathogen transmission, and population genetics provides a powerful method for this purpose. Tick population studies are uniquely challenging as their biology is shaped by complex interactions between hosts, microbiome and environmental factors.
View Article and Find Full Text PDFExplor Target Antitumor Ther
August 2025
Women's Biomedical Research Institute, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA.
O-Methylguanine-DNA methyltransferase (MGMT) acts as a genomic custodian, reversing alkylation damage to preserve DNA integrity. However, when its regulatory balance tips via promoter methylation, polymorphisms, or epigenetic silencing, MGMT can become a liability, fuelling cancer progression, treatment resistance, and poor outcomes across malignancies. This review uncovers the nuanced control of MGMT, revealing how its genetic and epigenetic shifts shape tumor behavior, therapeutic response, and risk stratification.
View Article and Find Full Text PDFbioRxiv
August 2025
Center for Data Sciences, Brigham and Women's Hospital, Harvard Medical School, Boston, MA, USA.
T cell receptors (TCRs) orchestrate adaptive immunity, yet the complex, repetitive architecture of the TCR loci has impeded systematic characterization of human genetic variation in the genes encoding the TCR. Using public long-read sequencing data from 2,668 donors, we build a near-complete map of common alleles in TCR V, D, and J genes, revealing amino acid variation at almost every position within V genes. We discover pervasive evidence of natural selection on TCR genes, including balancing selection on a TRAJ gene recognizing an immunodominant influenza epitope and positive selection on a TRAV gene.
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