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The evolution of groundwater quality in natural and contaminated aquifers is affected by complex interactions between physical transport and biogeochemical reactions. Identifying and quantifying the processes that control the overall system behavior is the key driver for experimentation and monitoring. However, we argue that, in contrast to other disciplines in earth sciences, process-based computer models are currently vastly underutilized in the quest for understanding subsurface biogeochemistry. Such models provide an essential avenue for quantitatively testing hypothetical combinations of interacting, complex physical and chemical processes. If a particular conceptual model, and its numerical counterpart, cannot adequately reproduce observed experimental data, its underlying hypothesis must be rejected. This quantitative process of hypothesis testing and falsification is central to scientific discovery. We provide a perspective on how closer interactions between experimentalists and numerical modelers would enhance this scientific process, and discuss the potential limitations that are currently holding us back. We also propose a data-model nexus involving a greater use of numerical process-based models for a more rigorous analysis of experimental observations while also generating the basis for a systematic improvement in the design of future experiments.
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http://dx.doi.org/10.1039/d1em00303h | DOI Listing |
Microorganisms
August 2025
Hubei Provincial Key Laboratory for Basin Ecology Intelligent Monitoring-Prediction and Protection, Wuhan 430010, China.
Microbial communities, as critical functional components of riverine ecosystems, play a pivotal role in biogeochemical cycles and water quality regulation. The South-to-North Water Diversion Middle Route Project (SNWD-MRP) is a major cross-basin water transfer initiative, and bacteria are essential for the stability of water quality in the project. This study employed environmental DNA (eDNA) metabarcoding targeting the 16S rRNA gene to investigate spatiotemporal variations in water quality and bacterial communities along the SNWD-MRP during summer and winter.
View Article and Find Full Text PDFPLoS One
August 2025
School of Geography, Liaoning Normal University, Dalian, China.
This study investigates the ecological stoichiometric characteristics of carbon (C), nitrogen (N), and phosphorus (P) across the leaf-litter-soil continuum in the block stream forest community of Laotudingzi Mountain, a representative paleo-periglacial landform in northeastern China. Utilizing X-ray fluorescence spectroscopy (XRF), we analyzed 13 dominant tree species (10 broadleaf, 3 coniferous) to unravel nutrient limitation mechanisms and cross-media coupling in this oligotrophic cryogenic ecosystem. Results indicate that P is the primary limiting nutrient, with mean N: P ratios in leaves (12.
View Article and Find Full Text PDFAnn Rev Mar Sci
August 2025
1Department of Biochemistry, University of California, Riverside, California, USA; email:
Marine dissolved organic matter (DOM) represents one of Earth's most complex exometabolomes, playing a central role in marine carbon cycling and long-term sequestration. Despite its biogeochemical importance, the molecular complexity of DOM has long challenged its analytical characterization. Here, we review recent advancements in structure-resolved analytical techniques for DOM.
View Article and Find Full Text PDFHarmful Algae
September 2025
Bermuda Institute of Ocean Sciences, a unit of the Julie Ann Wrigley Global Futures Laboratory at Arizona State University, St. George's, Bermuda.
Pelagic Sargassum, denoting the two species S. natans and S. fluitans, has become a focal point of both scientific and public interest due to recent superbloom events.
View Article and Find Full Text PDFGlob Chang Biol
August 2025
Qingdao Institute of Marine Geology, China Geological Survey, Qingdao, China.
Coastal blue carbon ecosystems (BCEs) face accelerating degradation from synergistic climate-human pressures, threatening their carbon sink function. This review synthesizes nonlinear interactions governing BCE carbon cycles by developing a novel DPSIR (Drivers-Pressures-State-Impacts-Responses) conceptual model. Our framework integrates biogeochemical processes (e.
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