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Species coexistence is a result of biotic interactions, environmental and historical conditions. The Janzen-Connell hypothesis assumes that conspecific negative density dependence (CNDD) is one of the local processes maintaining high species diversity by decreasing population growth rates at high densities. However, the contribution of CNDD to species richness variation across environmental gradients remains unclear. In 32 large forest plots all over the Japanese archipelago covering > 40,000 individual trees of > 300 species and based on size distributions, we analysed the strength of CNDD of individual species and its contribution to species number and diversity across altitude, mean annual temperature, mean annual precipitation and maximum snow depth gradients. The strength of CNDD was increasing towards low altitudes and high tree species number and diversity. The effect of CNDD on species number was changing across altitude, temperature and snow depth gradients and their combined effects contributed 11-18% of the overall explained variance. Our results suggest that CNDD can work as a mechanism structuring forest communities in the Japanese archipelago. Strong CNDD was observed to be connected with high species diversity under low environmental limitations where local biotic interactions are expected to be stronger than in niche-based community assemblies under high environmental filtering.
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http://dx.doi.org/10.1038/s41598-021-98025-5 | DOI Listing |
Eur J Clin Microbiol Infect Dis
September 2025
School of Bioengineering and Biosciences, Department of Biochemistry, Lovely Professional University, Punjab, 144411, India.
Purpose: This study investigates codon usage and amino acid usage bias in the genus Acinetobacter to uncover the evolutionary forces shaping these patterns and their implications for pathogenicity and biotechnology.
Methods: Codon usage patterns were examined in representative genomes of the genus Acinetobacter using standard codon bias indices, including GC content, relative synonymous codon usage (RSCU), effective number of codons (ENC), and codon adaptation index (CAI). Neutrality and parity plots were employed to evaluate the relative influence of mutational pressure and natural selection on codon preferences.
Genetica
September 2025
Faculty of Fisheries and Aquaculture Sciences, Universiti Malaysia Terengganu, Kuala Nerus, Terengganu, Malaysia.
Population genetics plays a critical role in creating policies for managing fisheries, conservation, and development of aquaculture. The golden snapper, Lutjanus johnii (Bloch, 1792), is a highly commercial and aquaculture important snapper species. This study used mitochondrial markers D-loop (151 specimens) and Cytochrome b (Cyt-b, 120 specimens) from 10 populations, including populations from the east South China Sea, the west South China Sea and the Strait of Malacca to investigate the genetic diversity, population connectivity, and historical demography of L.
View Article and Find Full Text PDFEnviron Monit Assess
September 2025
Department of Zoology, Faculty of Biology, University of Sevilla, Av. Reina Mercedes 6, 41012, Seville, Spain.
Marine ecosystems, particularly estuaries, are increasingly threatened by anthropogenic pressures. The Odiel Estuary has suffered severe contamination from acid mine drainage and industrial activities. Since 1986, mitigation efforts have been implemented, yet their long-term ecological effectiveness remains under-evaluated.
View Article and Find Full Text PDFmBio
September 2025
APC Microbiome Ireland, Biosciences Institute, Biosciences Research Institute, University College, Cork, Ireland.
Bacteriocins are antimicrobial peptides/proteins that can have narrow or broad inhibitory spectra and remarkable potency against clinically relevant pathogens. One such bacteriocin that is extensively used in the food industry and with potential for biotherapeutic application is the post-translationally modified peptide, nisin. Recent studies have shown the impact of nisin on the gastrointestinal microbiome, but relatively little is known of how abundant nisin production is in nature, the breadth of existing variants, and their antimicrobial potency.
View Article and Find Full Text PDFGlob Chang Biol
September 2025
Chair of Silviculture, Faculty of Environment and Natural Resources, Institute of Forest Sciences, University of Freiburg, Freiburg, Germany.
Mixed-species forests are proposed to enhance tree resistance and resilience to drought. However, growing evidence shows that tree species richness does not consistently improve tree growth responses to drought. The underlying mechanisms remain uncertain, especially under unprecedented multiyear droughts.
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