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Soil archaeal communities play an essential role in the biogeochemical cycles of agricultural ecosystems. However, the response and mechanisms of soil archaeal community structure and assembly processes to heavy metal pollution remain poorly understood. This study examined the archaeal community composition and assembly process and their relationships with environmental factors in arable soils around high geological background areas, metal enterprises, and mining areas, based on high-throughput sequencing. The arable soils within the study area exhibited high spatial heterogeneity of heavy metal content, as well as severe cadmium pollution. The ecological risk levels were high in some soil samples from mining areas, but low to moderate in other soil samples. Crenarchaeota (62.7%-98.3%) was the dominant phyla in all soil samples, followed by Halobacterota (1.1%-23.2%). The pH, organic matter, arsenic, and lead contents of the soil were significantly correlated with the archaeal community (<0.05), making them the main driving factors of archaeal community structure. The null-model analysis showed that the assembly process of the archaeal community was mainly influenced by heterogeneous processes, including heterogeneous selection (deterministic process) and dispersal limitation (stochastic process). Heterogeneous selection played a vital role in our study areas, while homogeneous selection only occurred in samples around the metal enterprises. Therefore, environmental selection was the ultimate driver of the archaeal community assembly process in this study, and its relative importance varied according to habitat type. Environmental heterogeneity increased the contribution of heterogeneous selection to community assembly, thus enhancing the community's resistance to environmental stress, and contributing to the stability and sustainability of the agricultural ecosystem.
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http://dx.doi.org/10.13227/j.hjkx.202101237 | DOI Listing |
Mar Life Sci Technol
August 2025
State Key Laboratory of Marine Environmental Science, Fujian Key Laboratory of Marine Carbon Sequestration, College of Ocean and Earth Sciences, Xiamen University, Xiamen, 361005 China.
Unlabelled: Marine heterotrophic prokaryotes initially release extracellular enzymes to cleave large organic molecules and then take up ambient substrates via transporters. Given the direct influence of extracellular enzymes on nutrient availability, understanding their diversity and dynamics is crucial in comprehending microbial interactions and organic matter cycling in aquatic ecosystems. In this study, metagenomics was employed to investigate the functional diversity and dynamics of extracellular enzymes and transporters in coastal waters over a 22-day period.
View Article and Find Full Text PDFJ Appl Microbiol
September 2025
Urban Horticulture Research and Extension Center, Shanghai Chenshan Botanical Garden, Shanghai 201602, China.
Aims: Phytoremediation is an effective method of remediating soils contaminated with heavy metals. However, it has some limitations in practical applications with regard to rare plant species, poor environmental adaptability, and long growth cycles. The dynamic response mechanisms of soil microbial communities during phytoremediation are still unclear, which restricts the optimization and promotion of this approach.
View Article and Find Full Text PDFBiology (Basel)
August 2025
Engineering Research Center of Polyploid Fish Reproduction and Breeding of the State Education Ministry, College of Life Sciences, Hunan Normal University, Changsha 410081, China.
The lotus-fish co-culture (LFC) system leverages plant-fish symbiosis to optimize aqua-culture environments, enhancing both economic and ecological yields. However, the eco-logical mechanisms of microbial communities in LFC systems remain poorly understood, particularly regarding the functional roles of fungi, archaea, and viruses. This study compared microbiota (viruses, archaea, fungi) in water, sediment, and fish (crucian carp) gut of LFC and intensive pond culture (IPC) systems using integrated metagenomic and environmental analyses.
View Article and Find Full Text PDFFEMS Microbiol Ecol
September 2025
Institute of Microbiology, Leibniz University Hannover, 30419 Hannover, Germany.
Unmanaged plastic waste in Sub-Saharan Africa pollutes large areas and degrades into microplastics. Surfaces of microplastic are colonized by bacteria and fungi, resulting in the plastisphere. Plastispheres from high population hotspots on the African continent enrich pathogenic fungi, posing a potential threat to human health.
View Article and Find Full Text PDFWater Res
August 2025
College of Environmental Science and Engineering, Hunan University, Changsha 410082, PR China; Key Laboratory of Environmental Biology and Pollution Control (Hunan University), Ministry of Education, Changsha 410082, PR China.
Lakes serve as critical regulators of biogeochemical processes, acting as hotspots for nitrous oxide (NO) emissions while simultaneously retaining substantial phosphorus loads. However, the role of total phosphorus (TP) in shaping NO dynamics remains poorly understood. Here, we investigated TP-mediated changes in NO concentrations in Dongting Lake, China, using a classification framework based on national water quality standards, validated with the GRiMe dataset and machine learning approaches.
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