Deep metabolome: Applications of deep learning in metabolomics.

Comput Struct Biotechnol J

Metabolomics and Systems Biology, Department of Biochemistry, Faculty of Medicine Siriraj Hospital, Mahidol University, Bangkok 10700, Thailand.

Published: October 2020


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Article Abstract

In the past few years, deep learning has been successfully applied to various omics data. However, the applications of deep learning in metabolomics are still relatively low compared to others omics. Currently, data pre-processing using convolutional neural network architecture appears to benefit the most from deep learning. Compound/structure identification and quantification using artificial neural network/deep learning performed relatively better than traditional machine learning techniques, whereas only marginally better results are observed in biological interpretations. Before deep learning can be effectively applied to metabolomics, several challenges should be addressed, including metabolome-specific deep learning architectures, dimensionality problems, and model evaluation regimes.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7575644PMC
http://dx.doi.org/10.1016/j.csbj.2020.09.033DOI Listing

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