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The recognition of either homomeric or heteromeric pairs of pentoses in an aromatic oligoamide double helical foldamer capsule was evidenced by circular dichroism (CD), NMR spectroscopy, and X-ray crystallography. The cavity of the host was predicted to be large enough to accommodate simultaneously two xylose molecules and to form a 1:2 complex (one container, two saccharides). Solution and solid-state data revealed the selective recognition of the α- C -d-xylopyranose tautomer, which is bound at two identical sites in the foldamer cavity. A step further was achieved by sequestering a heteromeric pair of pentoses, that is, one molecule of α- C -d-xylopyranose and one molecule of β- C -d-arabinopyranose despite the symmetrical nature of the host and despite the similarity of the guests. Subtle induced-fit and allosteric effects are responsible for the outstanding selectivities observed.
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http://dx.doi.org/10.1002/anie.201914929 | DOI Listing |
Biomolecules
August 2024
Institute of Physiology II, Jena University Hospital, Friedrich Schiller University Jena, 07743 Jena, Germany.
Chem Soc Rev
July 2024
NFMLab, Department of Chemistry, Materials, Chemical Engineering "Giulio Natta", Politecnico di Milano, via Mancinelli 7, I-20131 Milano, Italy.
The electrostatic attraction between charges of opposite signs and the repulsion between charges of the same sign are ubiquitous and influential phenomena in recognition and self-assembly processes. However, it has been recently revealed that specific attractive forces between ions with the same sign are relatively common. These forces can be strong enough to overcome the Coulomb repulsion between ions with the same sign, leading to the formation of stable anion⋯anion and cation⋯cation adducts.
View Article and Find Full Text PDFJ Am Chem Soc
August 2023
High Magnetic Field Laboratory, Hefei Institutes of Physical Science, Chinese Academy of Sciences, Hefei 230031, China.
Bimolecular or tetramolecular G-quadruplexes (GQs) are predominantly self-assembled by the same sequence-identical G-rich oligonucleotides and usually remain inert to the strand displacement reaction (SDR) with other short G-rich invading fragments of DNA or RNA. Appealingly, in this study, we demonstrate that a parallel homomeric bimolecular GQ target of d(CAGGGAGGGT) as the starting reactant, although completely folded in K solution and sufficiently stable (melting temperature of 57.7 °C), can still spontaneously accept strand invasion by a pair of short G-rich invading probes of d(TGGGA) near room temperature.
View Article and Find Full Text PDFRSC Adv
July 2023
Solid State and Supramolecular Chemistry Laboratory, School of Basic Sciences, Indian Institute of Technology Bhubaneswar Argul Bhubaneswar 752 050 India
Molecular complexes of 4-cyanophenylboronic acid (CB) with various N-donor compounds having different conformational features, for example, rigid (1,10-phenanthroline (), 4,7-phenanthroline (), 1,7-phenanthroline () and acridine ()) and linear (1,2-bis(4-pyridyl)ethane (), 1,2-bis(4-pyridyl)ethene () and 4,4'-azopyridine ()), have been reported. In all complexes, the -B(OH) moiety is found to be in a - confirmation, with the exception of structures containing , , and , wherein, - conformation is observed. Further, CB molecules remain intact in all structures except in the complexes with some linear N-donor ligands, wherein -B(OH) transforms to monoester (-B(OH)(OCH)) prior to the formation of corresponding molecular complexes.
View Article and Find Full Text PDFACS Omega
June 2023
Solid State & Supramolecular Chemistry Laboratory, School of Basic Sciences, Indian Institute of Technology Bhubaneswar, Argul, Bhubaneswar 752 050, India.
Hydrogen-bonded supramolecular assemblies of citric acid, , with some heterocyclic compounds (-donor and -oxide)-acridine (), phenazine (), 1,10-phenanthroline (), 1,7-phenanthroline (), 4,7-phenanthroline (), 1,4-diazabicyclo[2.2.2]octane (), and 4,4'-bipyridyl-,'-dioxide ()-have been reported.
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