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Large trees, here defined as ≥60 cm trunk diameter, are the most massive organisms in tropical rain forest, and are important in forest structure, dynamics and carbon cycling. The status of large trees in tropical forest is unclear, with both increasing and decreasing trends reported. We sampled across an old-growth tropical rain forest landscape at the La Selva Biological Station in Costa Rica to study the distribution and performance of large trees and their contribution to forest structure and dynamics. We censused all large trees in 238 0.50 ha plots, and also identified and measured all stems ≥10 cm diameter in 18 0.50 ha plots annually for 20 years (1997-2017). We assessed abundance, species diversity, and crown conditions of large trees in relation to soil type and topography, measured the contribution of large trees to stand structure, productivity, and dynamics, and analyzed the decadal population trends of large trees. Large trees accounted for 2.5% of stems and ~25% of mean basal area and Estimated Above-Ground Biomass, and produced ~10% of the estimated wood production. Crown exposure increased with stem diameter but predictability was low. Large tree density was about twice as high on more-fertile flat sites compared to less fertile sites on slopes and plateaus. Density of large trees increased 27% over the study interval, but the increase was restricted to the flat more-fertile sites. Mortality and recruitment differed between large trees and smaller stems, and strongly suggested that large tree density was affected by past climatic disturbances such as large El Niño events. Our results generally do not support the hypothesis of increasing biomass and turnover rates in tropical forest. We suggest that additional landscape-scale studies of large trees are needed to determine the generality of disturbance legacies in tropical forest study sites.
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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0224896 | PLOS |
Biol Lett
September 2025
Department of Biology and Environmental Science, Linnaeus University, Kalmar, Kalmar County, Sweden.
Theory, manipulation experiments and observational studies on biodiversity and ecosystem functioning largely concur that higher intraspecific diversity may increase the overall productivity of populations, buffer against environmental change and stabilize long-term productivity. However, evidence comes primarily from small and short-lived organisms. We tested for effects of genetic diversity on variation in forest growth by combining long-term data on annual individual growth rate (basal area increment (BAI)) with estimates of intrapopulation genetic variation (based on RAD-seq SNPs) for 18 natural pedunculate oak populations.
View Article and Find Full Text PDFBioinformatics
September 2025
Institute of Ecology and Evolution, University of Edinburgh, Edinburgh, United Kingdom.
Summary: In Bayesian phylogenetic and phylodynamic studies it is common to summarise the posterior distribution of trees with a time-calibrated summary phylogeny. While the maximum clade credibility (MCC) tree is often used for this purpose, we here show that a novel summary tree method-the highest independent posterior subtree reconstruction, or HIPSTR-contains consistently higher supported clades over MCC. We also provide faster computational routines for estimating both summary trees in an updated version of TreeAnnotator X, an open-source software program that summarizes the information from a sample of trees and returns many helpful statistics such as individual clade credibilities contained in the summary tree.
View Article and Find Full Text PDFPlant Cell Environ
September 2025
State Key Laboratory of Tree Genetics and Breeding, Co-Innovation Center for Sustainable Forestry in Southern China, Bamboo Research Institute, Key Laboratory of National Forestry and Grassland Administration on Subtropical Forest Biodiversity Conservation, School of Life Sciences, Nanjing Forestry
CRISPR ribonucleoprotein (RNP)-mediated genome editing offers a transgene-free platform for precise genetic modification in diverse herbaceous and tree species, including rice, wheat, apple, poplar, oil palm, rubber tree and grapevine. However, its application in woody plants faces distinct challenges, notably inefficient delivery and regeneration difficulties, particularly in species such as bamboo. While some of these issues also occur in herbaceous plants, they are often significantly more complex in woody species due to factors such as intricate cell wall architecture, widespread recalcitrant genotypes and inherent limitations of current delivery platforms.
View Article and Find Full Text PDFNew Phytol
September 2025
Laboratory of Tree Ring Research, University of Arizona, Tucson, AZ, 85721, USA.
Trees harbor large stores of nonstructural carbohydrates, some of which are quite old (> 10 yr), yet we know little of how these older stores may be used for woody growth. Crucially, the use of old carbohydrates during cellulose biosynthesis could confound climate reconstructions that rely on tree ring stable isotope ratios. We analyzed tree-ring cellulose ΔC and δC in earlywood of two pine species from montane forests in western North America using tree rings produced during the radiocarbon bomb pulse (1966-1980).
View Article and Find Full Text PDFFungal Biol
October 2025
University of Warsaw, Faculty of Biology, Białowieża Geobotanical Station, Sportowa 19, 17-230, Białowieża, Poland. Electronic address:
Wild mushrooms can be an important source of protein and essential amino acids, however very little is known about the environmental factors affecting the content of these compounds. In our study, we investigated the influence of soil properties (soil type, C/N ratio, pH) and tree stand characteristics (tree diversity, canopy cover, understory cover, and the proportion of deciduous trees) on total protein and essential amino acids (Valine, Leucine, Isoleucine, Phenylalanine, Lysine, Methionine, Arginine, Histidine) contents in seven wild-growing mushroom species (Macrolepiota procera, Rhodocolybia butyracea, Russula cyanoxantha, R.heterophylla, Lactifluus vellereus, Armillaria mellea s.
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