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Our knowledge of bacterial nucleoids originates mostly from studies of rod- or crescent-shaped bacteria. Here we reveal that Deinococcus radiodurans, a relatively large spherical bacterium with a multipartite genome, constitutes a valuable system for the study of the nucleoid in cocci. Using advanced microscopy, we show that D. radiodurans undergoes coordinated morphological changes at both the cellular and nucleoid level as it progresses through its cell cycle. The nucleoid is highly condensed, but also surprisingly dynamic, adopting multiple configurations and presenting an unusual arrangement in which oriC loci are radially distributed around clustered ter sites maintained at the cell centre. Single-particle tracking and fluorescence recovery after photobleaching studies of the histone-like HU protein suggest that its loose binding to DNA may contribute to this remarkable plasticity. These findings demonstrate that nucleoid organization is complex and tightly coupled to cell cycle progression in this organism.
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http://dx.doi.org/10.1038/s41467-019-11725-5 | DOI Listing |
J Biosci
September 2025
Department of Biochemistry, Indian Institute of Science, Bengaluru 560012, India.
Life on Earth is viable within a narrow window of physical parameters such as temperature, atmospheric pressure, oxygen concentration, etc. Fortunately, all these parameters are within that life-permissive window in most parts of our planet. Although most organisms cannot live beyond a limited range of these parameters, some fascinating lifeforms can survive, and some of them can even thrive, in extreme physical conditions beyond the optimal range.
View Article and Find Full Text PDFEnviron Microbiol
September 2025
Departamento de Biologia Marinha, Universidade Federal Fluminense, Rio de Janeiro, Brazil.
The collapse of the Fundão tailings dam in 2015 stands as the largest environmental disaster in Latin America and the global mining industry. This catastrophic event released around 62 million m of mining waste into the Doce River basin. This study aimed to assess the long-term effects of the disaster by analysing microbial communities in four lakes within the Doce River basin.
View Article and Find Full Text PDFBiochemistry (Mosc)
August 2025
National Research Center "Kurchatov Institute", Moscow, 123182, Russia.
Melting of promoter DNA around the transcription start site (TSS) is a critical step of transcription required for initiation of RNA synthesis. In bacteria, promoter melting is mediated by the holoenzyme of RNA polymerase (RNAP) consisting of the catalytic core enzyme and the promoter recognition subunit, σ factor. Previously, we showed that RNAPs from thermophilic and mesophilic are unable to open promoters at ambient temperatures and require heating for DNA melting.
View Article and Find Full Text PDFCurr Microbiol
August 2025
The Key Lab for Research & Development of Actinomycete Resources, Yunnan Institute of Microbiology, Chenggong Campus of Yunnan University, Chenggong District, Kunming, 650500, Yunnan, China.
A Gram-stain-positive bacterium, designated as YIM 134068, was isolated from a lichen. Strain YIM 134068 was non-motile, non-spore forming, coccus shaped, oxidase, and catalase positive. Cells could grow at 10-40 °C (optimum 28 °C) and pH 7.
View Article and Find Full Text PDFLife Sci Alliance
November 2025
MOE Key Laboratory of Biosystems Homeostasis and Protection, Institute of Biophysics, College of Life Sciences, Zhejiang University, Hangzhou, China
Gene transcription and translation are fundamental processes that underpin the vitality of living organisms. In bacteria, the classic promoter elements for transcription include the -35 region and the -10 region, whereas the ribosome binding site (RBS) is essential for translation. Our investigation of the upstream sequences of ORFs in has confirmed a -10 region-like motif, which appears as 5'-TANNNT-3' (-10-motif).
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