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A deactivation channel for laser-excited 1,3,5-triamino-2,4,6-trinitrobenzene (TATB) was studied by semiclassical dynamics. Results indicate that the excited state resulting from an electronic transition from the highest occupied molecular orbital (HOMO) to the lowest unoccupied molecular mrbital (LUMO) is deactivated via pyramidalization of the activated N atom in a nitro group, with a lifetime of 2.4 ps. An approximately 0.5-electron transfer from the aromatic ring to the activated nitro group led to a significant increase of the C⁻NO₂ bond length, which suggests that C⁻NO₂ bond breaking could be a trigger for an explosive reaction. The time-dependent density functional theory (TD-DFT) method was used to calculate the energies of the ground and S₁ excited states for each configuration in the simulated trajectory. The S₁←S₀ energy gap at the instance of non-adiabatic decay was found to be 0.096 eV, suggesting that the decay geometry is close to the conical intersection.
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http://dx.doi.org/10.3390/molecules23071593 | DOI Listing |
FASEB J
September 2025
Department of Pathology, University of Maryland School of Medicine, Baltimore, Maryland, USA.
P/Q-type (Ca2.1) Ca channels regulate the release of neurotransmitter at central synapses. Missense and nonsense mutations in CACNA1A, the gene that encodes the principal α subunit of the Ca2.
View Article and Find Full Text PDFBiophys J
August 2025
Division of Biomedical Science and Biochemistry, Research School of Biology, Australian National University, Canberra, ACT 2601, Australia. Electronic address:
Voltage-gated cation channels are crucial membrane proteins responsible for the electrical activity in excitable nerve, muscle and cardiac tissue. These channels respond to changes in the membrane potential via conformational changes in their voltage-sensing domains (VSDs) that lead to the opening and closing of the ion conduction pore. Since alternative states of the VSDs are difficult to capture via experimental methods, we investigated the application of AlphaFold2 and subsampling of its multiple sequence alignment input to computationally predict structures across a range of intermediate and endpoint states.
View Article and Find Full Text PDFJ Phys Chem Lett
September 2025
Nikolaev Institute of Inorganic Chemistry, Siberian Branch of Russian Academy of Sciences, 3, Acad. Lavrentiev Ave., Novosibirsk, 630090, Russia.
Energy transfer in fluorescent donor-acceptor pairs is typically governed by one of two mechanisms: Förster Resonance Energy Transfer (FRET) or Through-Bond Energy Transfer (TBET). In contrast to FRET, TBET has been widely assumed to require π-conjugation between the donor and acceptor units. In this work, we introduce a versatile strategy for simulating nonadiabatic quantum dynamics in large molecular systems and apply it to a dye featuring a coumarin donor, a xanthene acceptor and a non-π-conjugated diazinane linker.
View Article and Find Full Text PDFJ Physiol
August 2025
School of Biosciences, University of Sheffield, Sheffield, UK.
Head movements are detected and signalled to primary sensory neurons by vestibular types I and II hair cells. Signal transmission involves glutamate exocytosis from hair cells, which is triggered by Ca inflow through voltage-gated Ca1.3 Ca channels.
View Article and Find Full Text PDFNat Struct Mol Biol
August 2025
Department of Biochemistry and Molecular Biophysics, Columbia University, New York, NY, USA.
Kainate receptors (KARs) are tetrameric, ligand-gated ion channels of the ionotropic glutamate receptor family that mediate excitatory neurotransmission and modulate neuronal circuits and synaptic plasticity during development of the central nervous system. KARs are implicated in psychiatric and neurological diseases and represent a target of therapeutic intervention. Native KARs form complexes with neuropilin and tolloid-like auxiliary subunits (Neto1 and Neto2), which modulate their function, trafficking and synaptic localization.
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