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We improved upon the previously reported draft genome of strain PBC, a 4-aminobenzenesulfonate-degrading bacterium, by supplementing the assembly with Nanopore long reads which enabled the reconstruction of the genome as a single contig. From the complete genome, major genes responsible for the catabolism of 4-aminobenzenesulfonate in strain PBC are clustered in two distinct genomic regions. Although the catabolic genes for 4-sulfocatechol, the deaminated product of 4-aminobenzenesulfonate, are only found in , the operon responsible for the first deamination step of 4-aminobenzenesulfonate is conserved in various strains. The absence of gene in the complete genome of PBC is consistent with its -aminobenzoic acid (pABA) auxotrophy but surprisingly comparative genomics analysis of 14 genomes indicate that pABA auxotrophy is not an uncommon feature among members of this genus. Of even more interest, several strains do not possess the genomic potential for hydrogen oxidation, calling for a revision to the taxonomic description of as "hydrogen eating bacteria."
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http://dx.doi.org/10.3389/fmicb.2017.01880 | DOI Listing |
J Bacteriol
September 2025
Wadsworth Center, New York State Department of Health, Albany, New York, USA.
Prokaryotic genomes are gene-dense, so genes in the same orientation are often separated by short intergenic sequences or even overlap. Many mechanisms of regulation depend on open reading frames (ORFs) being spatially close to one another. Here, we describe one such mechanism, translational coupling, where translation of one gene promotes translation of a co-oriented neighboring gene.
View Article and Find Full Text PDFAppl Environ Microbiol
September 2025
College of Life Sciences, Northwest Normal University, Lanzhou, China.
Nitrogen leaching is a major pathway of nitrogen fertilizer loss. Although arbuscular mycorrhizal (AM) fungi are known to reduce nitrogen leaching by improving plant nitrogen uptake, the soil-based mechanisms remain unclear. A pot experiment was conducted using a randomized complete block design, with four nitrogen levels (0, 3.
View Article and Find Full Text PDFJ Microbiol Biol Educ
September 2025
University of California Riverside, Riverside, California, USA.
DNA literacy is becoming increasingly essential for navigating healthcare, understanding pandemics, and engaging with biotechnology-yet genomics education remains limited at the secondary level of education. We present a modular, hands-on curriculum designed for high school and early undergraduate students (ages 14-21) that introduces key genomics concepts through an experiment on fermentation, a process that is key to food preservation and medicine. Students follow a complete scientific process: exploring what DNA is and how microbial succession works, analyzing real DNA sequencing data, and writing a formal scientific report.
View Article and Find Full Text PDFJ Virol
September 2025
Laboratory of Virology, Wageningen University & Research, Wageningen, the Netherlands.
Vertebrate animals and many small DNA and single-stranded RNA viruses that infect vertebrates have evolved to suppress genomic CpG dinucleotides. All organisms and most viruses additionally suppress UpA dinucleotides in protein-coding RNA. Synonymously recoding viral genomes to introduce CpG or UpA dinucleotides has emerged as an approach for viral attenuation and vaccine development.
View Article and Find Full Text PDFJ Genet
September 2025
College of Life Sciences, Nanjing Forestry University, Nanjing 210037, People's Republic of China.
The family Syngnathidae includes seahorses, sea dragons, and pipefishes. We sequenced the complete mitochondrial DNA (mtDNA) genome of the belly pipefish, Bleeker, 1849. The genome is 16,646-bp long, and includes the standard complement for bony fishes of 13 protein-coding genes, 22 tRNA genes, two rRNA genes, and a control region, in the same order and strand distribution as other syngnathids.
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