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A Gram-negative, non-motile and short-rod shaped and gamma-radiation-resistant bacterium Deinococcus soli N5(T), isolated from a rice field soil in South Korea. The complete genome of D. soli N5(T) consists of a chromosome (3,236,984bp). The key enzymes for the central DNA repair mechanisms were present in the genome. The enzyme coding genes has been identified which is involving in the nucleotide excision repair (NER) pathway. The gene cluster in the genome sequence suggest that the D. soli N5(T) use (NER) pathways for efficient removal of pyrimidine dimers that are the most abundant type of UV- induced damage.
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http://dx.doi.org/10.1016/j.jbiotec.2015.07.008 | DOI Listing |
Int J Syst Evol Microbiol
November 2023
Shanghai Engineering Research Center of Hadal Science and Technology, College of Marine Sciences, Shanghai Ocean University, Shanghai 201306, PR China.
YIM F302 was compared with N5 to examine the taxonomic relationship between the two type strains. The 16S rRNA gene sequence of YIM F302 showed high similarity (99.9 %) to that of N5.
View Article and Find Full Text PDFAntonie Van Leeuwenhoek
April 2018
Department of Agricultural Biotechnology and Research Institute of Agriculture and Life Sciences, Seoul National University, Seoul, Republic of Korea.
A gamma radiation-resistant and pink-to-red pigmented bacterial strain, designated ID1504, was isolated from a car air-conditioning system sampled in Korea. The cells were observed to be Gram-stain negative, aerobic, motile with peritrichous flagella and short rod-shaped. Phylogenetically, the strain groups with the members of the genus Deinococcus and exhibits high 16S rRNA gene sequence similarities with Deinococcus arenae SA1 (94.
View Article and Find Full Text PDFJ Biotechnol
October 2015
Department of Bio & Environmental Technology, College of Natural Science, Seoul Women's University, Seoul 139-774, Republic of Korea. Electronic address:
A Gram-negative, non-motile and short-rod shaped and gamma-radiation-resistant bacterium Deinococcus soli N5(T), isolated from a rice field soil in South Korea. The complete genome of D. soli N5(T) consists of a chromosome (3,236,984bp).
View Article and Find Full Text PDFCurr Microbiol
June 2014
Department of Life Science, Dongguk University-Seoul, Seoul, 100-715, Republic of Korea.
A Gram-negative, non-motile, short rod-shaped bacterial strain, designated N5(T), was isolated from a rice field soil in South Korea. Phylogenetic analysis based on the 16S rRNA gene sequence of the new isolate showed that strain N5(T) belongs to the genus Deinococcus, family Deinococcaceae, showing the highest sequence similarity to Deinococcus grandis KACC 11979(T) (98.4 %) and Deinococcus daejeonensis KCTC 13751(T) (97.
View Article and Find Full Text PDF