98%
921
2 minutes
20
The bilayer bending modulus (Kc) is one of the most important physical constants characterizing lipid membranes, but precisely measuring it is a challenge, both experimentally and computationally. Experimental measurements on chemically identical bilayers often differ depending upon the techniques employed, and robust simulation results have previously been limited to coarse-grained models (at varying levels of resolution). This Communication demonstrates the extraction of Kc from fully atomistic molecular dynamics simulations for three different single-component lipid bilayers (DPPC, DOPC, and DOPE). The results agree quantitatively with experiments that measure thermal shape fluctuations in giant unilamellar vesicles. Lipid tilt, twist, and compression moduli are also reported.
Download full-text PDF |
Source |
---|---|
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4183605 | PMC |
http://dx.doi.org/10.1021/ja507910r | DOI Listing |
Phys Chem Chem Phys
September 2025
Masaryk University, Faculty of Science, Department of Chemistry, Kotlářská 2, Brno, 611 37, Czech Republic.
Structural and magnetic properties of ultra-small tetrahedron-shaped iron oxide nanoparticles were investigated using density functional theory. Tetrahedral and truncated tetrahedral models were considered in both non-functionalized form and with surfaces passivated by pseudo-hydrogen atoms. The focus on these two morphologies reflects their experimental relevance at this size scale and the feasibility of performing fully relaxed, atomistically resolved first-principles simulations.
View Article and Find Full Text PDFJ Chem Theory Comput
September 2025
Department of Physics, Nanoscience Center, University of Jyväskylä, Jyväskylä FI 40014, Finland.
-Heterocyclic carbene (NHC)-protected gold nanoclusters (AuNCs) have emerged as promising candidates for biomedical applications due to their high stability and strong photoluminescence. However, their integration into atomistic molecular dynamics (MD) simulations, which facilitates an understanding of their behavior in biological environments, has been hindered by the lack of reliable force field parameters. Here, we present a new set of parameters for classical MD simulations of NHC-protected AuNCs, fully compatible with the AMBER force field.
View Article and Find Full Text PDFPLoS Comput Biol
September 2025
Department of Analytical Chemistry, Applied Chemometrics and Molecular Modelling (FABI), Vrije Universiteit Brussel (VUB), Brussels, Belgium.
The serotonin-2A receptor (5-HT2AR) is an interesting target for drug design in the context of antidepressants that might have a rapid onset of action and/or be effective in treatment-resistant cases. The main challenge, however, is that the activation of this receptor can provoke hallucinations. Recent studies have shown that activating the receptor with certain (partial) agonists could potentially give rise to antidepressant effect without hallucinogenic side effects.
View Article and Find Full Text PDFMaterials (Basel)
August 2025
Department of Materials, Imperial College London, London SW7 2AZ, UK.
For reliable electronics, it is important to have an understanding of solder joint failure mechanisms. However, because of difficulties in real-time atomistic scale analysis during deformation, we still do not fully understand these mechanisms. Here, we report on the development of an innovative in situ method of observing the response of the microstructure to tensile strain at room temperature using high-voltage transmission electron microscopy (HV-TEM).
View Article and Find Full Text PDFAdv Mater
August 2025
Department of Mechanical and Industrial Engineering, University of Massachusetts, Amherst, MA, 01003, USA.
High-entropy alloys (HEAs) are promising candidates for advanced structural applications due to their excellent mechanical properties. Additive manufacturing (AM), with its rapid solidification conditions, enables the creation of unique nonequilibrium microstructures. To fully leverage the synergy between AM and HEAs, understanding how processing affects structure and properties is essential.
View Article and Find Full Text PDF