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Soil-surface CO2 efflux ('soil respiration') accounts for roughly two-thirds of forest ecosystem respiration, and can be divided into heterotrophic and autotrophic components. Conventionally, the latter is defined as respiration by plant roots. In Boreal forests, however, fine roots of trees are invariably covered by ectomycorrhizal fungi, which by definition are heterotrophs, but like the roots, receive sugars derived from photosynthesis. There is also a significant leaching of labile carbon compounds from the ectomycorrhizal roots. It is, therefore, more meaningful in the context of carbon balance studies to include mycorrhizal fungi and other mycorrhizosphere organisms, dependent on the direct flux of labile carbon from photosynthesis, in the autotrophic component. Hence, heterotrophic activity becomes reserved for the decomposition of more complex organic molecules in litter and other forms of soil organic matter. In reality, the complex situation is perhaps best described as a continuum from strict autotrophy to strict heterotrophy. As a result of this, and associated methodological problems, estimates of the contribution of autotrophic respiration to total soil respiration have been highly variable. Based on recent stand-scale tree girdling experiments we have estimated that autotrophic respiration in boreal forest accounts for up to 50-65% of soil respiration during the snow-free part of the year. Girdling experiments and studies of the delta(13)C of the soil CO2 efflux show that there is a lag of a few days between the carbon uptake by photosynthesis and the release by autotrophic soil respiration of the assimilated carbon. In contrast, estimates of 'bomb 14C' and other approaches have suggested that it takes years to decades between carbon uptake via photosynthesis and the bulk of soil heterotrophic activity. Temperature is normally used as a driver in models of soil processes and it is often assumed that autotrophic soil activity is more sensitive to temperature than is heterotrophic activity, but this is questionable. It is inherently difficult to make a precise separation of autotrophic and heterotrophic respiration from soils. The partitioning between these two components is highly variable in space and time, and taxonomic autotrophs and heterotrophs may perform the function of the other group to some degree. Care should be taken to disturb as little as possible the delicate plant-microbe-soil system, and this speaks for non-intrusive isotopic methods. There are, however, problems in modelling the flux of isotopes through this complex system. Girdling of tree stands is a very robust alternative approach to make the distinction between autotrophic and heterotrophic activities, but ultimately kills the trees and cannot, therefore, always be used. A further development would be to block the phloem sugar transport reversibly. We propose that thus assumption needs further critical testing.
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Ann Bot
September 2025
Department of Ecology, Environment and Plant Sciences, Stockholm University, SE-106 91 Stockholm, Sweden.
Background: Advances in DNA sequencing technology have led to a rapid increase in the number of species with organelle genomes and even complete nuclear genomes being sequenced. Thousands of plastid genomes from across all major clades of land plants are now available, and one of the surprising findings is the recurring event of complete or functional loss of genes involved in cyclic electron transport during photosynthesis - the ndh genes that encode subunits of the chloroplast NADH dehydrogenase-like (NDH) complex. Gene loss in non-photosynthetic, heterotrophic plants may be expected, but the increasing number of losses being discovered in autotrophic plants questions the role and potential dispensability of the ndh genes and the entire NDH complex.
View Article and Find Full Text PDFEnviron Res
August 2025
State Key Laboratory of Water Resources and Hydropower Engineering Science, Wuhan University, Wuhan, 430072, China; Hubei Key Laboratory of Water System Science for Sponge City Construction, Wuhan University, Wuhan, 430072, China. Electronic address:
This study evaluated a pyrite-based biofilm-electrode reactor (PBER) for nitrate removal under varying C/N ratios. Optimal performance occurred at a C/N ratio of 3.0, achieving a NO-N removal efficiency (NRE) of 94.
View Article and Find Full Text PDFNat Commun
August 2025
School of Chemistry, Chemical Engineering, and Life Science, Wuhan University of Technology, Wuhan, PR China.
The sustainable bioproduction of chemicals from CO remains far from reaching its full potential. The productivity of autotrophic bioprocesses could benefit from harnessing ubiquitous mechanical energy sources, which are inaccessible for energizing bioproduction systems to this day. In this work, we develop a hybrid system where the efficient piezocatalyst zinc oxide (ZnO) harnesses mechanical vibration to stimulate the growth of the chemolithoautotrophic bacterium Cupriavidus necator and its production of the bioplastic polyhydroxybutyrate (PHB) from CO.
View Article and Find Full Text PDFEnviron Pollut
August 2025
Universite de Pau et des Pays de L'Adour, E2S-UPPA, CNRS, IPREM, Pau, France.
Biofilms are integral to the biogeochemical cycles of aquatic ecosystems, primarily through complex interactions among microorganism that mediate the transformation and movement of key elements. In a previous study, we reported that Cyanobacteria within biofilms grown in outdoor mesocosms exhibited sensitivity to cobalt (Co) when exposed to increasing Co concentrations (background concentrations, 0.1, 0.
View Article and Find Full Text PDFISME J
August 2025
ULPGC, University of Las Palmas de Gran Canaria, Campus Universitario de Tafira, 35017, Canary Islands, Spain.
Millions of tons of plastic enter the ocean annually, yet the effects of their leachates on the microbial loop are poorly understood. This study investigates how dissolved organic carbon (DOC) released from field-collected plastics and a bioplastic influences the growth of the protozoan Oxyrrhis marina and its associated bacterial community. Plastics increased dissolved organic carbon (DOC) concentrations in seawater by 5 to 34-fold, stimulating O.
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