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We present here an algorithm for computing stable, well-defined localized orthonormal virtual orbitals which depend smoothly on nuclear coordinates. The algorithm is very fast, limited only by diagonalization of two matrices with dimension the size of the number of virtual orbitals. Furthermore, we require no more than quadratic (in the number of electrons) storage. The basic premise behind our algorithm is that one can decompose any given atomic-orbital (AO) vector space as a minimal basis space (which includes the occupied and valence virtual spaces) and a hard-virtual (HV) space (which includes everything else). The valence virtual space localizes easily with standard methods, while the hard-virtual space is constructed to be atom centered and automatically local. The orbitals presented here may be computed almost as quickly as projecting the AO basis onto the virtual space and are almost as local (according to orbital variance), while our orbitals are orthonormal (rather than redundant and nonorthogonal). We expect this algorithm to find use in local-correlation methods.
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http://dx.doi.org/10.1063/1.2033687 | DOI Listing |
J Craniofac Surg
September 2025
Department of Anatomy, Keio University School of Medicine, Tokyo, Japan.
Mixed reality (MR) enables real-time overlay of virtual anatomic structures in the surgical field and has potential applications in craniofacial surgeries. Although early monobloc advancements have benefited from transfacial pinning, the technique remains challenging owing to the limited safe insertion area and orbital injury risk. The authors processed DICOM-format computed tomography images for bone segmentation and added a rod representing the optimal pin insertion trajectory.
View Article and Find Full Text PDFMedicina (Kaunas)
July 2025
Riga Stradins University, LV-1010 Riga, Latvia.
: Orbital floor fractures are challenging to treat, due to the complex orbital anatomy and limited surgical access. Emerging technologies-such as virtual surgical planning (VSP), 3D printing, patient-specific implants (PSIs), and intraoperative navigation-offer promising advancements to improve the surgical precision and clinical outcomes. This review systematically evaluates and synthesizes current technological modalities with respect to their accuracy, operative duration, cost-effectiveness, and postoperative functional outcomes.
View Article and Find Full Text PDFJ Chem Theory Comput
August 2025
State Key Laboratory of Precision and Intelligent Chemistry, and Department of Chemical Physics, University of Science and Technology of China, Hefei, Anhui 230026, China.
The second-order Møller-Plesset perturbation (MP2) theory is a post-Hartree-Fock method widely used to describe weak correlation energies in solids and molecules, but its high computational cost scales as (). Herein, we present an accurate and efficient implementation of MP2 within the plane-wave (PW) basis set for both periodic and molecular systems, which incorporates the interpolative separable density fitting (ISDF) decomposition and the Laplace transformation (LT) of the energy denominator. These innovations avoid the direct construction of electron repulsion integrals (ERIs) and reduce the computational complexity of MP2 from () to ().
View Article and Find Full Text PDFBioorg Chem
August 2025
Computational Chemistry and Drug Discovery Division, Quanta Calculus, Greater Noida 201310, Uttar Pradesh, India.
The ongoing risk of zoonotic transmission from bat-derived coronaviruses underscores the urgent need for broad-spectrum antiviral strategies. In this study, we investigate the potential of Food and Drug Administration (FDA)-approved antiviral drugs to inhibit the S1 C-terminal domain of the spike protein from HKU5-CoV-2, a Merbecovirus closely related to Middle East Respiratory Syndrome Coronavirus (MERS-CoV). A structure-based virtual screening approach was employed, followed by 3000 ns molecular dynamics (MD) simulations and binding free energy estimation using MM-PBSA analysis.
View Article and Find Full Text PDFComput Biol Med
September 2025
Structural Biology and Biocomputing Lab, Department of Bioinformatics, Alagappa University, Karaikudi, 630 003, Tamil Nadu, India. Electronic address:
Nocardiosis, an infectious disease caused by the opportunistic pathogen Nocardia asteroides, primarily affects immunocompromised individuals, often presenting as a pulmonary infection initiated by inhalation. Despite extensive research, there is still a need for novel therapeutic targets and effective lead molecules. Whole genome sequencing of N.
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