Publications by authors named "Sudipta Ray"

The Nijmegen breakage syndrome 1 (NBS1) protein is a core member of the MRE11-RAD50-NBS1 (MRN) complex and is known to function as a DNA damage sensor within the plant DNA damage response (DDR) pathway. We previously reported that NBS1 from Physcomitrium patens (PpNBS1) also plays a pivotal role in the defense against oxidative damage by reducing the level of cellular reactive oxygen species (ROS). Our study demonstrated that overexpression of PpNBS1 induces the expression of antioxidant genes involved in ROS scavenging in transgenic tobacco plants, leading to reduced accumulation of hydrogen peroxide (HO) and superoxide (O•).

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Alcohol is the most abused substance among adolescents and has a profound impact on health, society, and the economy. Alcohol intoxication is linked to neuroinflammation and neuronal damage, which result in behavioral alterations such as motor dysfunction, neuronal injury, cognitive deficits, and inflammation. Alcohol-induced neuroinflammation is associated with the activation of central nervous system cells, including astrocytes, and the release of proinflammatory cytokines.

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As per the National Survey on Drug Use and Health, 10.5% of Americans aged 12 years and older are suffering from alcohol use disorder, with a wide range of neurological disorders. Alcohol-mediated neurological disorders can be linked to Alzheimer's-like pathology, which has not been well studied.

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NeuroHIV affects approximately 30-60% of people living with HIV-1 (PLWH) and is characterized by varying degrees of cognitive impairments, presenting a multifaceted challenge, the underlying cause of which is chronic, low-level neuroinflammation. Such smoldering neuroinflammation is likely an outcome of lifelong reliance on antiretrovirals coupled with residual virus replication in the brains of PLWH. Despite advancements in antiretroviral therapeutics, our understanding of the molecular mechanism(s) driving inflammatory processes in the brain remains limited.

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Article Synopsis
  • - The study investigates how HIF-1α in astrocytes contributes to the harmful effects of HIV-1 Tat on neurons, particularly related to the formation of amyloids that are linked to Alzheimer's-like symptoms in HIV-Associated Neurocognitive Disorders (HAND).
  • - Researchers found that when rat hippocampal neurons are exposed to astrocyte-derived extracellular vesicles (ADEVs) carrying these toxic amyloids, it leads to neuronal damage, including synaptic loss and functional declines in communication between neurons.
  • - Silencing HIF-1α in astrocytes reduced the production of amyloid-carrying ADEVs, protecting neurons from damage and preventing related behavioral changes and Alzheimer's-like pathology in mice, suggesting HIF
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Drug abuse and related disorders are a global public health crisis affecting millions, but to date, limited treatment options are available. Abused drugs include but are not limited to opioids, cocaine, nicotine, methamphetamine, and alcohol. Drug abuse and human immunodeficiency virus-1/acquired immune deficiency syndrome (HIV-1/AIDS) are inextricably linked.

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Unlabelled: -inositol oxygenase (MIOX), the only catabolic enzyme of the inositol pathway, catalyzes conversion of -inositol to D-GlcA (glucuronic acid). The present study encompasses bioinformatic analysis of gene across phylogenetically related plant lineages and representative animal groups. Comparative motif analysis of the gene(s) across various plant groups suggested existence of abiotic- stress related -acting elements such as, DRE, MYB, MYC, STRE, MeJa among others.

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The genus Medik. (Subfamily: Scilloideae) has a narrow distribution in India and several overlapping morphological traits make the genus taxonomically challenging at the species level. Cytogenetic characterization can provide additional taxonomic data and can be used to evaluate genetic diversity at the species level.

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Human immunodeficiency virus (HIV) and drug abuse are intertwined epidemics, leading to compromised adherence to combined antiretroviral therapy (cART) and exacerbation of NeuroHIV. As opioid abuse causes increased viral replication and load, leading to a further compromised immune system in people living with HIV (PLWH), it is paramount to address this comorbidity to reduce the NeuroHIV pathogenesis. Non-human primates are well-suited models to study mechanisms involved in HIV neuropathogenesis and provide a better understanding of the underlying mechanisms involved in the comorbidity of HIV and drug abuse, leading to the development of more effective treatments for PLWH.

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In this work, a novel soluble and air-stable electron acceptor containing perylenediimide moiety named ANTPABA-PDI was designed and synthesized with band gap 1.78eV and that was used as non-fullerene acceptor material. ANTPABA-PDI possess not only good solubility but also much lower LUMO (lowest unoccupied molecular orbital) energy level.

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Article Synopsis
  • Plants face various environmental stresses that can damage their DNA and affect genome stability.
  • The study identifies PpRecA2, a protein from moss, that can partly replace RecA in bacteria and is involved in DNA damage repair.
  • While overexpressing PpRecA2 protects the chloroplast genome in tobacco plants, it doesn't help with nuclear DNA damage due to lack of necessary interacting partners.
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  • The C-terminal region of SbGPRP1, a protein from Sorghum, functions as an antimicrobial peptide, specifically targeting gram-positive bacteria such as Bacillus subtilis and Rhodococcus fascians.
  • Deleting a crucial 23-amino-acid sequence from SbGPRP1 inhibits its antimicrobial activity, highlighting its significance for the protein's function.
  • Research found that C-SbGPRP1 interacts with bacterial membrane proteins, particularly YszA from Bacillus subtilis, which suggests a mechanism of action for its antimicrobial effects.
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Nijmegen breakage syndrome 1 (NBS1) protein is a core member of the MRE11-RAD50-NBS1 (MRN) complex that plays a crucial role in DNA damage sensing and repair in plants. Here we report that NBS1 from moss Physcomitrium patens reduces oxidative damage by lowering the cellular ROS in addition to its known role in oxidative DNA damage recovery. Real-time transcript analysis showed up-regulation of the PpNBS1 transcript under different stress conditions.

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The R2R3 type MYB transcription factors participate in controlling flavonoid production in plants, including anthocyanin and proanthocyanin. Black rice with high anthocyanin content is an important candidate for understanding R2R3-MYB-based regulation of the anthocyanin biosynthesis pathway (ABP). This study was undertaken to draw the functional relationship of an R2R3-MYB protein with anthocyanin biosynthesis and oxidative stress tolerance in plants.

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Plants use a diverse set of proteins to mitigate various abiotic stresses. The intrinsically disordered protein dehydrin is an important member of this repertoire of proteins, characterized by a canonical amphipathic K-segment. It can also contain other stress-mitigating noncanonical segments-a likely reflection of the extremely diverse nature of abiotic stress encountered by plants.

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A high incidence of oral squamous cell carcinoma (OSCC) is observed in South-East Asian countries due to addictions such as chewing tobacco. Local invasion and distant metastases are primary causes of poor prognosis in OSCC. This study aimed to understand the alterations in metastasis biomarkers, such as stromal cell-derived factor-1α (SDF-1 or SDF1α) and its receptor C-X-C chemokine receptor type 4 (CXCR4), in OSCC patient samples that were stratified based on the history of addiction to chewing tobacco.

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The use of chewing tobacco is a severe risk factor for oral mucosa related diseases including cancer in India as well as USA, although its relationship with Oral Leukoplakia (OL) or related carcinogenicity is still not clear. This work chose two oncogenic pathway proteins- the Epidermal Growth Factor Receptor and the WNT pathway among leukoplakia patients and established their correlation with the individuals' tobacco chewing habit. 89 fresh patients with OL were selected for the work.

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Sorghum glycine rich proline rich protein (SbGPRP1) exhibit antimicrobial properties and play a crucial role during biotic stress condition. Several proteins in plants build up the innate immune response system in plants which get triggered during the occurrence of biotic stress. Here we report the functional characterization of a glycine-rich proline-rich protein (SbGPRP1) from Sorghum which was previously demonstrated to be involved in abiotic stresses.

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Halophytes are rich sources of salt stress tolerance genes which have often been utilized for introduction of salt-tolerance character in salt-sensitive plants. In the present study, we overexpressed PcINO1 and PcIMT1 gene(s), earlier characterized in this laboratory from wild halophytic rice Porteresia coarctata, into IR64 indica rice either singly or in combination and assessed their role in conferring salt-tolerance. Homozygous T/T transgenic plants revealed that PcINO1 transformed transgenic rice lines exhibit significantly higher tolerance upto 200 mM or higher salt concentration with negligible compromise in their growth or other physiological parameters compared to the untransformed system grown without stress.

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Background: Madhuca indica belongs to the family sapotaceae, commonly known as Mahua. It is primarily known for alcoholic beverage production and is reported to have anti-inflammatory, analgesic and antipyretic properties. Madhuca indica has also been reported to be effective in several diseases.

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Vasculogenic mimicry, an endothelia-independent tumor microcirculation has been found in various cancers and is thought to be achieved by cancer stem like cells. Dacarbazine resistance is one of the most common features of melanoma and recent studies suggest that the mode of resistance is closely related to the formation of vasculogenic mimicry. In our work, we examined the anticancer effect of Lupeol, a novel phytochemical with Dacarbazine in vivo and in vitro.

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