Publications by authors named "Simone Nicolardi"

Polysaccharide-based glycoconjugate bacterial vaccines can help combat multidrug-resistant pathogens by harnessing the immune system to recognize and neutralize bacteria effectively. Bacterial cells can be engineered to link O-antigen polysaccharides (O-PSs) to a carrier protein, producing a potential bacterial vaccine, e.g.

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Article Synopsis
  • The cell-envelope of Gram-negative bacteria contains lipopolysaccharides (LPS) that activate the innate immune system via Toll-Like Receptors (TLRs), particularly TLR4 and TLR2.
  • Akkermansia muciniphila, a beneficial intestinal bacterium, has a unique form of LPS called lipooligosaccharide (LOS) that lacks an O-polysaccharide repeating unit and presents unusual structural features.
  • The study shows that A. muciniphila LOS elicits a stronger anti-inflammatory response by activating TLR2 over TLR4, potentially explaining its positive effects on the host's health.
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Cold-adapted species are able to generate cryoprotective proteins and glycoproteins to prevent freezing damage. The [→4)--D-Man-(1→4)--D-Xyl-(1→] xylomannan from the Alaska beetle was disclosed by Walters and co-workers in 2009 as the first glycan-based antifreeze agent, which was later reported to be found in diverse taxa. Here, we report the rapid synthesis of four types of xylomannans, including the proposed antifreeze xylomannan up to a 64-mer (Type I), the regioisomeric [→3)--D-Man-(1→4)--D-Xyl-(1→] 16-mer (Type II), the diastereomeric [→4)--L-Man-(1→4)--D-Xyl-(1→] 16-mer (Type III) and the block-wise [→4)--D-Man-(1→] [→4)--D-Xyl-(1→] 32-mer (Type IV), by employing a strategic iterative exponential glycan growth (IEGG) process.

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Monoclonal antibody (mAb) glycoengineering has the potential to improve the efficacy of biopharmaceuticals by fine-tuning specific biological properties. Glycosylation analysis is key to monitoring the glycoengineering process. Various mass spectrometry (MS)-based methods are available to characterize mAb glycosylation at different structural levels, but comprehensive analysis is typically time-consuming and costly.

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Total plasma protein -glycosylation (TPNG) changes are a hallmark of many diseases. Here, we analyzed the TPNG of 169 COVID-19 patients and 12 healthy controls, using mass spectrometry, resulting in the relative quantification of 85 -glycans. We found a COVID-19 -glycomic signature, with 59 glycans differing between patients and controls, many of them additionally differentiating between severe and mild COVID-19.

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Bacterial pathogens can cause a broad range of infections with detrimental effects on health. Vaccine development is essential as multi-drug resistance in bacterial infections is a rising concern. Recombinantly produced proteins carrying O-antigen glycosylation are promising glycoconjugate vaccine candidates to prevent bacterial infections.

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Apolipoprotein-CIII (apo-CIII) inhibits the clearance of triglycerides from circulation and is associated with an increased risk of diabetes complications. It exists in four main proteoforms: O-glycosylated variants containing either zero, one, or two sialic acids and a non-glycosylated variant. O-glycosylation may affect the metabolic functions of apo-CIII.

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Background: Changes in plasma protein glycosylation are known to functionally affect proteins and to associate with liver diseases, including cirrhosis and hepatocellular carcinoma. Autoimmune hepatitis (AIH) is a liver disease characterized by liver inflammation and raised serum levels of IgG, and is difficult to distinguish from other liver diseases. The aim of this study was to examine plasma and IgG-specific N-glycosylation in AIH and compare it with healthy controls and other liver diseases.

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Unlabelled: Filamentous growth of streptomycetes coincides with the synthesis and deposition of an uncharacterized protective glucan at hyphal tips. Synthesis of this glucan depends on the integral membrane protein CslA and the radical copper oxidase GlxA, which are part of a presumably large multiprotein complex operating at growing tips. Here, we show that CslA and GlxA interact by forming a protein complex that is sufficient to synthesize cellulose .

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Apolipoprotein-CIII (apo-CIII) is involved in triglyceride-rich lipoprotein metabolism and linked to beta-cell damage, insulin resistance, and cardiovascular disease. Apo-CIII exists in four main proteoforms: non-glycosylated (apo-CIII), and glycosylated apo-CIII with zero, one, or two sialic acids (apo-CIII, apo-CIII and apo-CIII). Our objective is to determine how apo-CIII glycosylation affects lipid traits and type 2 diabetes prevalence, and to investigate the genetic basis of these relations with a genome-wide association study (GWAS) on apo-CIII glycosylation.

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Visceral leishmaniasis (VL) is a clinical form of leishmaniasis with high mortality rates when not treated. Diagnosis suffers from invasive techniques and sub-optimal sensitivities. The current (affordable) treatment with pentavalent antimony as advised by the WHO is possibly harmful to the patient.

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The ability of to grow on methanol as the sole carbon and energy source has been the object of intense research activity. Unquestionably, the bacterial cell envelope serves as a defensive barrier against such an environmental stressor, with a decisive role played by the membrane lipidome, which is crucial for stress resistance. However, the chemistry and the function of the main constituent of the outer membrane, the lipopolysaccharide (LPS), is still undefined.

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Trastuzumab is known to be heterogeneous in terms of charge. Stressing trastuzumab under physiological conditions (pH 7.4 and 37 °C) increases charge heterogeneity further.

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Ultrahigh resolution mass spectrometry (UHR-MS) coupled with direct infusion (DI) electrospray ionization offers a fast solution for accurate untargeted profiling. Fourier transform ion cyclotron resonance (FT-ICR) mass spectrometers have been shown to produce a wealth of insights into complex chemical systems because they enable unambiguous molecular formula assignment even if the vast majority of signals is of unknown identity. Interlaboratory comparisons are required to apply this type of instrumentation in quality control (for food industry or pharmaceuticals), large-scale environmental studies, or clinical diagnostics.

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Group B (GBS) is a Gram-positive bacterium and the most common cause of neonatal blood and brain infections. At least 10 different serotypes exist, that are characterized by their different capsular polysaccharides. The Group B carbohydrate (GBC) is shared by all serotypes and therefore attractive be used in a glycoconjugate vaccine.

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Bacterial glycoconjugate vaccines have a major role in preventing microbial infections. Immunogenic bacterial glycans, such as O-antigen polysaccharides, can be recombinantly expressed and combined with specific carrier proteins to produce effective vaccines. O-Antigen polysaccharides are typically polydisperse, and carrier proteins can have multiple glycosylation sites.

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Xylanases are of great value in various industries, including paper, food, and biorefinery. Due to their biotechnological production, these enzymes can contain a variety of post-translational modifications, which may have a profound effect on protein function. Understanding the structure-function relationship can guide the development of products with optimal performance.

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Lipopolysaccharides, the major outer membrane components of Gram-negative bacteria, are crucial actors of the host-microbial dialogue. They can contribute to the establishment of either symbiosis or bacterial virulence, depending on the bacterial lifestyle. Plant microbiota shows great complexity, promotes plant health and growth and assures protection from pathogens.

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Recombinant human erythropoietin (EPO) is a complex therapeutic glycoprotein with three N- and one O-glycosylation sites. Glycosylation of EPO influences its safety and efficacy and is defined as a critical quality attribute. Thus, analytical methods for profiling EPO glycosylation are highly demanded.

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The study of protein O-glycosylation is important in biological research as O-glycans have been reported to regulate a multitude of molecular and cell biology processes occurring in cancer. It is known that alterations in O-glycosylation are involved in the development and progression of cancer. Their easy accessibility makes in vitro established cell lines suitable and useful models for studying biological mechanisms in disease.

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Apolipoprotein-CIII (apo-CIII) is a glycoprotein involved in lipid metabolism and its levels are associated with cardiovascular disease risk. Apo-CIII sialylation is associated with improved plasma triglyceride levels and its glycosylation may have an effect on the clearance of triglyceride-rich lipoproteins by directing these particles to different metabolic pathways. Large-scale sample cohort studies are required to fully elucidate the role of apo-CIII glycosylation in lipid metabolism and associated cardiovascular disease.

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Breast cancer is the most prevalent cancer in women. Early detection of this disease improves survival and therefore population screenings, based on mammography, are performed. However, the sensitivity of this screening modality is not optimal and new screening methods, such as blood tests, are being explored.

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Article Synopsis
  • Carbohydrates like oligosaccharides and polysaccharides are important biopolymers involved in various biological processes and often studied after being isolated from natural sources.
  • Pure compounds with well-defined structures, obtained via chemical or enzymatic synthesis, are necessary for accurate analysis, and new synthetic techniques have made it easier to access larger polysaccharides.
  • The study uses advanced MALDI FT-ICR mass spectrometry to analyze synthetic carbohydrates of different sizes, revealing details about their monosaccharide content and linkage types through the identification of fragment ions, enhancing our understanding of their composition and structures.
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  • A study examined the connection between altered glycosylation of prostate-specific antigen (PSA) and male infertility, noting that PSA plays a crucial role in fertilization but its glycosylation's role remains unclear.
  • Researchers developed a new high-throughput method using mass spectrometry to analyze PSA glycopeptides with detailed resolution, applying this to samples from 102 men (both infertile and fertile).
  • The findings showed that while various glycopeptides were identified, there was no significant difference in PSA glycosylation between the two groups, and the method could also be useful for studying PSA from other bodily fluids and diseases.
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Bispecific antibodies (BsAb) are next-generation, antibody-based pharmaceuticals which come with a great functional versatility and often a vast structural heterogeneity. Although engineering of the primary sequence of BsAbs guides the proper pairing of the different chains, several side products can often be observed contributing to the macroheterogeneity of these products. Furthermore, changes in the amino acid sequence can result in different protein modifications which can affect the properties of the antibody and further increase the structural complexity.

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