Publications by authors named "Kashan Shaikh"

Article Synopsis
  • A new multiplexed immunofluorescence technology allows for detailed imaging of multiple breast cancer biomarkers on a single tissue sample, focusing on cellular interactions and co-expression.
  • The method involves an automated microfluidic flow cell for efficient staining and imaging, and has been tested on a small number of breast tumors to compare with traditional methods.
  • This approach shows consistent results with conventional immunohistochemistry and offers improved accuracy and the ability to visualize more biomarkers within the same tissue sample.
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Article Synopsis
  • Limitations in identifying unique proteins and DNA in tissue samples hinder our understanding of health and disease.
  • The multiplexed fluorescence microscopy method (MxIF) allows for detailed analysis of multiple biological markers in tissue samples by chemically inactivating fluorescent dyes after imaging to enable reuse.
  • MxIF demonstrates similar accuracy to traditional methods in identifying protein markers while revealing significant diversity in cancer cells, paving the way for advancements in research and diagnostics.
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The biobarcode assay (BCA) is capable of achieving low detection limits and high specificity for both protein and DNA targets. The realization of a BCA in a microfluidic format presents unique opportunities and challenges. In this work, we describe a modified form of the BCA called the surface immobilized biobarcode assay (SI-BCA).

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Functionalized nanoparticles hold great promise in realizing highly sensitive and selective biodetection. We report a single disposable chip which is capable of carrying out a multi-step process that employs nanoparticles--a bio-barcode assay (BCA) for single protein marker detection. To illustrate the capability of the system, we tested for the presence of prostate specific antigen (PSA) in buffer solution and goat serum.

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We describe a novel class of DNA separation media for microchip electrophoresis, "physically cross-linked" block copolymer networks, which provide rapid (<4.5 min) and remarkably enhanced resolution of DNA in a size range critical for genotyping. Linear poly(acrylamide-co-dihexylacrylamide) (LPA-co-DHA) comprising as little as 0.

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Microfluidic laboratory-on-a-chip (LOC) systems based on a modular architecture are presented. The architecture is conceptualized on two levels: a single-chip level and a multiple-chip module (MCM) system level. At the individual chip level, a multilayer approach segregates components belonging to two fundamental categories: passive fluidic components (channels and reaction chambers) and active electromechanical control structures (sensors and actuators).

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Previously, we reported a micro magnetic stir-bar mixer driven by an external rotating magnetic field and its rapid mixing performance in polydimethyl-siloxane (PDMS) channels. The PDMS piece with embedded fluid channels were manually aligned to a glass substrate and assembled. In this paper, we report the fabrication and testing results of a micro magnetic stir-bar monolithically integrated in parylene surface-micromachined channels with improved design features, including small tolerance of the stir-bar to channel wall (10 microm).

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