Publications by authors named "Floris Chabrun"

Time-lapse imaging and deep-learning algorithms are promising tools to assess the most viable embryos and improve embryo selection in IVF laboratories. Here, we developed and validated a deep learning model based on self-supervised contrastive learning. The model was developed with a new approach based on matched KID (Known Implantation Data) embryos derived from the same cohort of a stimulation cycle, both judged to be of good quality according to classical morphological criteria and morphokinetics, transferred fresh or frozen, but with a different implantation fate (clinical pregnancy vs.

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Accurate prediction of risk of progression from smoldering (SMM) to active multiple myeloma (MM) is paramount to individualized early therapeutic strategies with minimum risk of overtreatment. Current risk stratification models do not account for evolving biomarker trajectories. We assembled the largest cohort to date of 2,270 SMM patients from six international centers with longitudinal clinical and biological data to train and validate the PANGEA 2.

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We did not identify any vacuole-related differences in circulating immature myeloid cells between VEXAS patients and UBA1-WT 'VEXAS-like' patients. The similar vacuolization of circulating immature myeloid cells between VEXAS and UBA1-WT patients is explained by the main bloodstream passage of late precursors, in which the vacuolization is already similar in bone marrow in both cases.

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The management of life-threatening complications in patients with sickle cell disease (SCD) requires an accurate and reproducible quantification of haemoglobin A (HbA) and S (HbS) with a short turnaround time and 24-7 availability. We propose a novel method for quantifying HbA and HbS using the glycated haemoglobin (HbA1c) assay on a Tosoh HLC-723G8 (G8) analyser in variant mode. HbA and HbS results obtained using our method highly correlated with results obtained using a reference method (r > 0.

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Cardiac complications are frequently found following a stroke in humans whose pathophysiological mechanism remains poorly understood. We used machine learning to analyse a large set of data from a metabolipidomic study assaying 630 metabolites in a rat stroke model to investigate metabolic changes affecting the heart within 72 h after a stroke. Twelve rats undergoing a stroke and 28 rats undergoing the sham procedure were investigated.

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Introduction: Assessing labial salivary gland exocrinopathy is a cornerstone in primary Sjögren's syndrome. Currently this relies on the histopathologic diagnosis of focal lymphocytic sialadenitis and computing a focus score by counting lym=phocyte foci. However, those lesions represent advanced stages of primary Sjögren's syndrome, although earlier recognition of primary Sjögren's syndrome and its effective treatment could prevent irreversible damage to labial salivary gland.

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Objectives: VEXAS syndrome is a newly described autoinflammatory disease associated with somatic mutations and vacuolization of myeloid precursors. This disease possesses an increasingly broad spectrum, leading to an increase in the number of suspected cases. Its diagnosis via bone-marrow aspiration and -gene sequencing is time-consuming and expensive.

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We thank He et al. for their comments on our article (1), which gives us the opportunity to clarify some methodological points. 1.

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Article Synopsis
  • Intrauterine growth restriction (IUGR) is linked to metabolic changes that may increase the risk of future health issues, but the placenta's role in this has not been extensively studied.
  • A targeted metabolomics study analyzed 188 metabolites in placentas and cord blood from two cohorts, revealing significant differences between IUGR cases and controls.
  • The findings indicate substantial impairments in lipid and mitochondrial metabolism in IUGR placentas, suggesting these changes could affect fetal metabolism long-term.
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Cancer/Testis Antigens (CTAs) represent a group of proteins whose expression under physiological conditions is restricted to testis but activated in many human cancers. Also, it was observed that co-expression of multiple CTAs worsens the patient prognosis. Five CTAs were reported acting in mitochondria and we recently reported 147 transcripts encoded by 67 CTAs encoding for proteins potentially targeted to mitochondria.

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  • Researchers aimed to enhance predictions for left ventricular remodeling (LVR) within three months post-myocardial infarction (MI) by utilizing machine learning techniques.
  • A study involved 443 ST-elevation MI patients at Angers University Hospital, collecting various clinical, biological, and CMR imaging data to analyze the incidence of LVR using advanced algorithms.
  • The most effective machine learning model, a neural network using seven key variables, achieved a higher accuracy (AUC of 0.78) and sensitivity (92%) compared to conventional models, highlighting the benefits of data-driven approaches in predicting LVR.
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  • The study investigates the effectiveness of urine TIMP2 IGFBP7 compared to early changes in plasma creatinine (∆pCr) for detecting cardiac surgery-associated acute kidney injury (CS-AKI) in older patients undergoing aortic valve replacement.
  • It involved 65 patients, revealing that ∆pCr was a more reliable indicator of CS-AKI than TIMP2 IGFBP7 and other blood biomarkers like pNGAL, suggesting ∆pCr had better predictive value.
  • The findings highlight that the new biomarkers examined, including TIMP2 IGFBP7, did not significantly improve detection or differentiate between persistent and transient CS-AKI compared to monitoring ∆pCr alone.
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Background: Serum protein electrophoresis (SPE) is a common clinical laboratory test, mainly indicated for the diagnosis and follow-up of monoclonal gammopathies. A time-consuming and potentially subjective human expertise is required for SPE analysis to detect possible pitfalls and to provide a clinically relevant interpretation.

Methods: An expert-annotated SPE dataset of 159 969 entries was used to develop SPECTR (serum protein electrophoresis computer-assisted recognition), a deep learning-based artificial intelligence, which analyzes and interprets raw SPE curves produced by an analytical system into text comments that can be used by practitioners.

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Purpose: The lacrimal exocrinopathy of primary Sjögren's syndrome (pSS) is one of the main causes of severe dry eye syndrome and a burden for patients. Early recognition and treatment could prevent irreversible damage to lacrimal glands. The aim of this study was to find biomarkers in tears, using metabolomics and data mining approaches, in patients with newly-diagnosed pSS compared to other causes of dry eye syndrome.

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Elevated plasma vitamin B12 has been associated with solid cancers, based on a single B12 measurement. We evaluated the incidence of solid cancers following B12 measurement in patients with persistent elevated B12, compared to patients without elevated B12 and to patients with non-persistent elevated B12. The study population included patients with at least two plasma B12 measurements without already known elevated-B12-related causes.

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The importance of sexual dimorphism of the mouse brain metabolome was recently highlighted, in addition to a high regional specificity found between the frontal cortex, the cerebellum, and the brain stem. To address the origin of this dimorphism, we performed gonadectomy on both sexes, followed by a metabolomic study targeting 188 metabolites in the three brain regions. While sham controls, which underwent the same surgical procedure without gonadectomy, reproduced the regional sexual dimorphism of the metabolome previously identified, no sex difference was identifiable after gonadectomy, through both univariate and multivariate analyses.

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The postmortem diagnosis of hypothermia fatalities is often complex due to the absence of pathognomonic lesions and biomarkers. In this study, potential novel biomarkers of hypothermia fatalities were searched in the vitreous humor of known cases of hypothermia fatalities ( = 20) compared to control cases ( = 16), using a targeted metabolomics approach allowing quantitative detection of 188 metabolites. A robust discriminant model with good predictivity was obtained with the supervised OPLS-DA multivariate analysis, showing a distinct separation between the hypothermia and control groups.

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Article Synopsis
  • The study investigates the role of neutrophils, a type of white blood cell, in Alzheimer's disease (AD), focusing on whether abnormal neutrophil morphology could be a potential marker for the disease.
  • Deep learning models were developed to analyze images of neutrophils and predict the presence of AD, alongside models for subclassifying leukocytes and detecting biases in the data.
  • The findings indicated that while the models excelled at leukocyte classification, they were unsuccessful in predicting AD, and no morphological abnormalities in neutrophils were found in patients with Alzheimer’s disease.
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Descriptive and retrospective studies without control groups have suggested a possible association between primary Sjögren's syndrome (pSS) and vitamin B12 (B12) deficiency. This is of importance because several mucosal and neurological features are common to these two conditions and could be prevented or reversed in case of B12 deficiency. We aimed to evaluate the association between pSS and B12 deficiency.

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Sole measurement of plasma vitamin B12 is no longer enough to identify vitamin B12 (B12) deficiency. When plasma vitamin B12 is in the low-normal range, especially between 201 and 350 ng/L, B12 deficiency should be assessed by measurements of plasma homocysteine and/or plasma methylmalonic acid (MMA). However, these biomarkers also accumulate during renal impairment, leading to a decreased specificity for B12 deficiency.

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