Publications by authors named "Emma L Johnston"

Background And Aims: Janus Kinase inhibitors (JAKi) provide effective treatment for ulcerative colitis (UC), but inadequate response (IR) or intolerance occurs frequently. This study aimed to assess effectiveness of a second JAKi in a real-world UC cohort.

Methods: A retrospective multicentre cohort study encompassing 19 UK hospitals was undertaken.

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Climate change is increasing wildfire intensity, introducing new risks to estuarine systems. However, the impacts of wildfires on estuaries and their recovery remain poorly understood. To address this, we conducted a large-scale longitudinal survey investigating sediment quality across river-to-estuary systems affected by fire.

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Student evaluations of teaching (SET) have been widely used by university staff to inform decisions on hiring and promotion. In recent years, an increasing body of research has revealed that student evaluations may be systemically affected by students' own conscious or unconscious biases. In this article, we study a data set from an Australian university, where both numerical and text survey responses were available in large quantities.

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AbstractSuccessional dynamics can vary because of a range of ecological and environmental factors, but our understanding of biogeographic variation in succession, and the processes contributing to community development across ecosystems, is limited. The pattern and rate of recruitment of dispersive propagules likely differs over large spatial scales and can be an important predictor of successional trajectory. Over a 20° tropical-temperate latitudinal gradient, we measured sessile invertebrates over 12 months of community development and successive 3-month recruitment windows to understand succession and how it is influenced by recruitment.

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Many studies have documented discrepancies in student evaluation of teaching ratings between male and female instructors and between ethnic majority and minority instructors. Given the importance of such ratings to academic careers and the likelihood of potential intergroup bias, it is crucial that institutions consider approaches to mitigate such biases. Several recent studies have found that simple bias mitigation messaging can be effective in reducing gender and other biases.

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Light availability and habitat complexity are two key drivers of community assembly. Urbanisation has been shown to affect both, with important consequences to ecological communities. On the intertidal, for instance, studies have shown that light intensity is greater on natural rocky shores than on less complex artificial habitats (seawalls), though different habitats can also experience similar light intensities, for example when shaded by urban structures.

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Human influence in the deep-sea is increasing as mining and drilling operations expand, and waters warm because of climate change. Here, we investigate how the long-lived deep-sea bivalve, Acesta excavata responds to sediment pollution and/or acute elevated temperatures. A.

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Eutrophication is a worldwide issue that can disrupt ecosystem processes in sediments. Studies have shown that macrofauna influences sediment processes by engineering environments that constrain microbial communities. Here, we explored the effect of different sizes of the Sydney cockle (Anadara trapezia), on bacterial and archaeal communities in natural and experimentally enriched sediments.

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Plastic pollution poses environmental and socio-economic risks, requiring policy and management interventions. The evidence-base for informing management and evaluation of their effectiveness is limited. Partnerships with citizen scientists provide opportunities to increase the spatio-temporal scale of monitoring programs, where training and standardised protocols provides opportunities for the use of data in addressing multiple hypotheses.

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Article Synopsis
  • Stormwater drains transport debris from land to sea, especially in urban areas, where hard surfaces speed up this process.
  • Variation in debris types and amounts is influenced by land use and human activities, making it crucial to understand these factors for effective debris management.
  • Research conducted in Greater Melbourne during and before COVID-19 assessed how lockdowns affected debris patterns, revealing that while total macro debris decreased, problematic items like cigarette butts and single-use plastics remained prevalent, and new debris types like masks and gloves increased significantly.
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  • A study in Sydney Harbour examined the impact of recreational activities on marine debris, finding that piers had significantly higher debris levels than nearby soft-sediment habitats.
  • Over 2,800 debris items were collected, with more than half being plastic and a large portion linked to recreational fishing, especially near the estuary mouth.
  • The research suggests that management efforts should concentrate on areas near piers and that public awareness campaigns should address the behaviors of recreational users to reduce debris.
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Novel combinations of climatic conditions due to climate change and prolonged fire seasons have contributed to an increased occurrence of "megafires". Such large-scale fires pose an unknown threat to biodiversity due to the increased extent and severity of burn. Assessments of wildfires often focus on terrestrial ecosystems and effects on aquatic habitats are less documented, particularly in coastal environments.

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  • The study examines the effectiveness of sequential drug treatments for ulcerative colitis (UC), specifically comparing the use of vedolizumab (VDZ) and anti-TNF therapies as second-line treatments.
  • Researchers analyzed data from patients who switched treatments between May 2013 and August 2020, looking at various health outcomes over a 52-week period.
  • Results indicated that patients receiving VDZ after anti-TNF had significantly better treatment persistence, colectomy-free survival, and clinical remission compared to those receiving anti-TNF after VDZ, suggesting a favorable effect of the treatment order on patient outcomes.
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  • Large-scale desalination is being increasingly used to meet growing freshwater demands, but the discharge of hypersaline brine can impact marine ecosystems.
  • A comprehensive 7-year study investigated how hypersaline discharge from desalination affects fish and invertebrate communities in temperate reefs, finding significant changes in fish and invertebrate compositions within specific distances from the discharge site.
  • The results showed that while fish diversity increased near the outlet, invertebrate diversity remained stable, indicating that the impact of hypersaline discharge is localized and can be balanced with the benefits of enhanced water security from desalination.
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The biodiversity of marine and coastal habitats is experiencing unprecedented change. While there are well-known drivers of these changes, such as overexploitation, climate change and pollution, there are also relatively unknown emerging issues that are poorly understood or recognized that have potentially positive or negative impacts on marine and coastal ecosystems. In this inaugural Marine and Coastal Horizon Scan, we brought together 30 scientists, policymakers and practitioners with transdisciplinary expertise in marine and coastal systems to identify new issues that are likely to have a significant impact on the functioning and conservation of marine and coastal biodiversity over the next 5-10 years.

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Coral reefs are amongst the most biodiverse ecosystems on earth, and while stony corals create the foundational complexity of these ecosystems, octocorals and anemones contribute significantly to their biodiversity and function. Like stony corals, many octocorals contain Symbiodiniaceae endosymbionts and can bleach when temperatures exceed the species' upper thermal limit. Here, we report octocoral bleaching susceptibility and resistance within the subtropical Lord Howe Island coral reef ecosystem during and after marine heatwaves in 2019.

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Estuaries are one of the most valuable biomes on earth. Although humans are highly dependent on these ecosystems, anthropogenic activities have impacted estuaries worldwide, altering their ecological functions and ability to provide a variety of important ecosystem services. Many anthropogenic stressors combine to affect the soft sedimentary habitats that dominate estuarine ecosystems.

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Article Synopsis
  • Marine artificial structures, like pilings, are altering natural marine habitats and can lead to reduced species diversity and increased bioinvasion.
  • Most studies have focused on how these structures affect rocky habitats, neglecting their impact on nearby sedimentary environments.
  • Our research reveals that sediments near pilings had different characteristics and demonstrated varying oxygen consumption and primary productivity compared to those near natural reefs, with notable differences depending on local conditions.
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Antarctic sea-ice forms a complex and dynamic system that drives many ecological processes in the Southern Ocean. Sea-ice microalgae and their associated microbial communities are understood to influence nutrient flow and allocation in marine polar environments. Sea-ice microalgae and their microbiota can have high seasonal and regional (>1000 km) compositional and abundance variation, driven by factors modulating their growth, symbiotic interactions and function.

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Pathogens and polymers can separately cause disease; however, environmental and medical researchers are increasingly investigating the capacity of polymers to transfer pathogenic bacteria, and cause disease, to hosts in new environments. We integrated causal frameworks from ecology and epidemiology into one interdisciplinary framework with four stages (colonization, survival, transfer, disease). We then systematically and critically reviewed 111 environmental and medical papers.

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Coastal systems such as estuaries are threatened by multiple anthropogenic stressors worldwide. However, how these stressors and estuarine hydrology shape benthic bacterial communities and their functions remains poorly known. Here, we surveyed sediment bacterial communities in poorly flushed embayments and well flushed channels in Sydney Harbour, Australia, using 16S rRNA gene sequencing.

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Anthropogenic marine debris is a persistent threat to oceans, imposing risks to ecosystems and the communities they support. Whilst an understanding of marine debris risks is steadily advancing, monitoring at spatial and temporal scales relevant to management remains limited. Citizen science projects address this shortcoming but are often critiqued on data accuracy and potential bias in sampling efforts.

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Eutrophication is an increasing problem worldwide and can disrupt ecosystem processes in which macrobenthic bioturbators play an essential role. This study explores how intraspecific variation in body size affects the survival, mobility and impact on sediment organic matter breakdown in enriched sediments of an infaunal bivalve. A mesocosm experiment was conducted in which monocultures and all size combinations of three body sizes (small, medium and large) of the Sydney cockle, Anadara trapezia, were exposed to natural or organically enriched sediments.

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Marine protected areas (MPAs) are a primary tool for the stewardship, conservation, and restoration of marine ecosystems, yet 69% of global MPAs are only partially protected (i.e., are open to some form of fishing).

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This method develops a local environmental stewardship indicator (LESI), which represents the level of stewardship action of a person at a place. The goal of the indicator is to quantify stewardship activity and allow it to be compared and modelled. LESI requires a brief interview to ascertain an individual's past and current stewardship activities, which are scored on a frequency scale for each of seven action categories.

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