Publications by authors named "Amod Kumar"

Availability of safe drinking water is one of the requirements for maintaining good health. Unfortunately, inhabitants of many nations suffer from adverse health effects due to the intake of arsenic-contaminated groundwater. The Vaishali district of Bihar (India) is the part of Ganga River Basin, a hotspot of arsenic contamination and hence, risk assessment among its individuals is highly pertinent.

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The present study was undertaken to elucidate the population structure and differentiation of Indian yak from Chinese and wild cohorts on genome-wide scale by identifying the selection sweeps and genomic basis of their adaptation across different comparisons while analyzing whole genome sequencing (WGS) data using latest bioinformatics tools. The study included 105 individuals from three distinct yak populations i.e.

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  • The study investigates population-stratifying and ancestry-informative genetic markers in Indian, Chinese, and wild yak using whole genome resequencing to enhance our understanding of their genetics and ancestry.
  • It analyzes data from 105 yak individuals, identifying over a million high-quality SNP markers, and compares different selection strategies and marker densities to determine the most effective for clustering these populations.
  • The results indicate that a specific marker density (10K) yields the highest genomic breed clustering accuracy, significantly improving estimates of genetic differentiation among the three yak populations.
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  • * The development of the Axiom_Ashwa SNP array, with 613,950 SNPs, aims to enhance genetic analysis and support conservation efforts by accurately genotyping both indigenous and Thoroughbred horses.
  • * Linkage disequilibrium analysis reveals that Indian breeds have lower genetic diversity compared to exotic breeds, highlighting the need for immediate conservation measures to protect these valuable equine resources.
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  • - The study investigates the genome sequences of three Indian yak populations and compares them with the Jinchuan yak from China, highlighting the uniqueness and adaptability of Indian yaks in extreme climates.
  • - Researchers found 37,437 runs of homozygosity (ROH) across four yak populations, with the Chinese yaks showing higher inbreeding rates, while Indian yaks exhibited more stable and lower inbreeding levels.
  • - Five genetic hotspots linked to critical traits for survival, such as hair growth and nutrient response, were identified, suggesting strong natural selection for these traits in adapting to environmental challenges.
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Chilika, a native buffalo breed of the Eastern coast of India, is mainly distributed around the Chilika brackish water lake connected with the Bay of Bengal Sea. This breed possesses a unique ability to delve deep into the salty water of the lake and stay there to feed on local vegetation of saline nature. Adaptation to salinity is a genetic phenomenon; however, the genetic basis underlying salinity tolerance is still limited in animals, specifically in livestock.

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The primary objective of Sustainable Development Goal target 2.5 established by the United Nations is to ensure the preservation of genetic diversity in domesticated animals. The ICAR-National Bureau of Animal Genetic Resources in India has been actively engaged in the conservation of cattle and buffalo bull semen for long-term storage.

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The present study aims to identify genomic variants through a whole genome sequencing (WGS) approach and uncover biological pathways associated with adaptation and fitness in Indian yak populations. A total of 30 samples (10 from each population) were included from Arunachali, Himachali and Ladakhi yak populations. WGS analysis revealed a total of 32171644, 27260825, and 32632460 SNPs and 4865254, 4429941, and 4847513 Indels in the Arunachali, Himachali, and Ladakhi yaks, respectively.

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The present study was conducted to assess the expected genetic gain for first lactation production and reproduction traits in Murrah buffaloes, in addition to optimization of progenies/sire. Data for period 1971-2020 were used from National Dairy Research Institute. Performance traits considered were 305 days milk yield (305DMY), average daily milk yield (ADMY), peak yield (PY), lactation length (LL), calving to first insemination interval (CFI), days open (DO), and calving interval (CI).

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Sunlight is pivotal for our survival, and daily UV exposure has impacted the evolutionary course of all forms of life, from microorganisms to humans. Deciphering the role of UVR in regulating the microbial dynamics of environmental and host-associated microbes is crucial. UVR may be responsible for affecting skin pathology by influencing the skin microbiome, both qualitatively and quantitatively, as evident in low-dose narrow-band UVB phototherapy.

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• Highthrouput sequencing of small RNA of H5N1 infected and mock infected chicken lungs. • 297 miRNAs identified in mock-infected and 201 miRNAs identified in AIV infected chicken lungs. • 36 miRNAs were upregulated and 90 were downregulated during H5N1 infection.

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The present investigation was performed to compare the global gene expression profile in peripheral blood mononuclear cells (PBMCs) of and crossbred ( × ) cattle. Previously, several studies revealed the disease tolerance potential of cattle but underlying genetic mechanism is still not fully explored. The PBMCs model was used for this investigation as it plays crucial role in the immune system regulation.

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Arunachali yak, the only registered yak breed of India, is crucial for the economic sustainability of pastoralist Monpa community. This study intended to determine the genomic diversity and to identify signatures of selection in the breed. Previously available double digest restriction-site associated DNA (ddRAD) sequencing data of Arunachali yak animals was processed and 99,919 SNPs were considered for further analysis.

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We have already entered the post-antibiotic era as the outbreaks of numerous multidrug-resistant strains in the community as well as hospital-acquired infections are ringing alarm bells in the health sector. Acinetobacter baumannii is one such pathogen that has been considered a worldwide threat as it acquires multidrug resistance. It is one of the most challenging hospital-acquired pathogens as World Health Organization has listed carbapenem-resistant A.

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In addition to the transmission of paternal genome, spermatozoa also carry coding as well as noncoding microRNAs (miRNAs) into the female oocyte during the process of biological fertilization. Based on RNA deep sequencing, a total 28 number of differentially expressed miRNAs were cataloged in categorized Frieswal crossbred (Holstein Friesian X Sahiwal) bull semen on the basis of conception rate (CR) in field progeny testing program. Validation of selected miRNAs viz.

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A built environment is a human-made environment providing surroundings for human occupancy, activities, and settlement. It is supposed to safeguard humans from all undesirable and harmful pollutants; however, indoor concentrations of some pollutants are much greater than that of the outdoors. Bioaerosols infiltrate from the outdoors in addition to many indoor sources of bioaerosols including the use of various chemicals as well as activities like cooking, smoking, cleaning, or even normal movement.

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Introduction: Late adolescence age (16-19 years) is organized around central task of achieving an identity. In India, age at marriage for girls has been legally declared as 18 years, but many girls are married much before this age. Early marriage for girls can have profound psychological and emotional impacts.

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Background And Objectives: Haemoglobin content is the well accepted indicator for anaemia assessment. The high prevalence of anaemia, maternal health care issues and adverse delivery outcome in Jharkhand, we investigated whether delivering women with anaemia would present a modifiable risk of preterm (PTB) and low birth weight (LBW).

Methods: A facility-based cross-sectional study involving pregnant women, with screening for pregnancy endpoints and haemoglobin assay, were conducted.

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The high level exposure to arsenic induces marked oxidative and genotoxic stress. However, information on the potential of low level arsenic exposure in this context is still scanty. In the present study, the extent of oxidative stress and genetic toxicity induced by low arsenic exposure was explored in freshwater fish Channa punctatus.

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The pathogenesis of dengue hemorrhagic fever (DHF), following dengue virus (DENV) infection, is a complex and poorly understood phenomenon. In view of the clinical need of identifying patients with higher likelihood of developing this severe outcome, we undertook a comparative genome-wide association analysis of epitope variants from sequences available in the ViPR database that have been reported to be differentially related to dengue fever and DHF. Having enumerated the incriminated epitope variants, we determined the corresponding HLA alleles in the context of which DENV infection could potentially precipitate DHF.

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Background: The combinatorial effects of Plasmodium infection, perturbation of inflammatory responses and the dichotomic role of TNF promoter polymorphism has potential clinical and physiological relevance during pregnancy.

Objective And Methods: This coordinated orchestration instigated us to investigate the circulating level of inflammatory cytokines (IL-1β, TNF-α and IL-6) employing ELISA in a stratified group of samples and the plausible genetic association of TNF-α -308 G/A using PCR-RFLP/sequencing during Plasmodium vivax infection in pregnancy.

Results: We observed significantly elevated concentrations of IL-1β were observed, followed by IL-6 and TNF-α in women with malaria (WWM) and in malaria in pregnancy (MIP).

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Nitric oxide (NO) has dicotomic influence on modulating host-parasite interplay, synchronizing physiological orchestrations and diagnostic potential; instigated us to investigate the plausible association and genetic regulation among NO level, components of oxidative stress, iNOS polymorphisms and risk of malaria. Here, we experimentally elucidate that iNOS promoter polymorphisms are associated with risk of malaria; employing mutation specific genotyping, functional interplay using western blot and RT-PCR, quantitative estimation of NO, total antioxidant content (TAC) and reactive oxygen species (ROS). Genotyping revealed significantly associated risk of P.

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  • WPS (Wavelet Peak Signal) is a non-invasive technique to assess human health, but it collects noise alongside the actual signals, making it essential to clean the data for accurate disease diagnosis.
  • The study focuses on optimizing wavelet denoising techniques to improve the signal-to-noise ratio by systematically varying different parameters and evaluating their impact on performance using metrics like MSE and PSNR.
  • Results demonstrate that using the 'db9' wavelet with a specific threshold function significantly enhances noise reduction, indicating that this approach could be beneficial for processing WPS data across various applications.
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Pasteurella multocida causes acute septicemic and respiratory diseases, including haemorrhagic septicaemia, in cattle and buffalo with case fatality of 100%. In the present study, mice were infected with P. multocida (1.

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