Publications by authors named "Aakash Chawade"

Zymoseptoria tritici, the causal agent of Septoria tritici blotch (STB) in bread wheat (Triticum aestivum), leads to significant global yield losses. Resistance breeding is vital for managing STB, but there is limited information on Z. tritici infection behaviour in Ethiopia.

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Background: Scald caused by Rhynchosporium graminicola is a common foliar disease affecting barley production worldwide. Identifying and utilizing scald resistance genes and quantitative trait loci (QTL) to develop barley cultivars with durable and effective resistance to scald is crucial.

Results: In the present study, we evaluated 275 spring barley genotypes together with 4 commercial check cultivars under controlled conditions and examined the underlying genetics of scald resistance in these genotypes.

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Genomic selection (GS) accelerates plant breeding by predicting complex traits using genomic data. This study compares genomic best linear unbiased prediction (GBLUP), quantile mapping (QM)-an adjustment to GBLUP predictions-and four outlier detection methods. Using 14 real datasets, predictive accuracy was evaluated with Pearson's correlation (COR) and normalized root mean square error (NRMSE).

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Background: Beneficial microorganisms can act as biological control agents (BCAs) directly by targeting pathogens or indirectly by enhancing the plant's defense mechanisms against pathogens. However, efficiencies with which plants benefit from BCAs vary, potentially because of genetic variation in plants for plant-BCA compatibility. The aim of this study was to explore the genetic variation in winter wheat for modulation of Clonostachys rosea-mediated biocontrol of septoria tritici blotch disease caused by the fungal pathogen Zymoseptoria tritici.

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Wheat blast is a devastating disease in the tropical and subtropical regions of South America and has recently spread to Bangladesh and Zambia. Host resistance to this disease has primarily relied on the 2NS/2AS translocation, making it crucial to identify and utilize novel sources of resistance. In the current study, a recombinant inbred line population consisting of 345 BCF progenies was generated, using the susceptible wheat genotype 'Gladius' as the female and recurrent parent and the resistant line 'KU-2097' as the male parent.

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Background: Fusarium head blight (FHB) is a major disease affecting cereal crops including wheat, barley, rye, oats and maize. Its predominant causal agent is the ascomycete fungus Fusarium graminearum, which infects the spikes and thereby reduces grain yield and quality. The frequency and severity of FHB epidemics has increased in recent years, threatening global food security.

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Article Synopsis
  • Genetic gain in Nordic spring barley varieties is 1.07% per year, which highlights the importance of continuous yield improvement for this essential European crop.
  • The study used historical data from 2014 to 2022 to analyze genetic gains and assessed the effectiveness of genomic prediction (GP) by testing 375 breeding lines across multiple environments from 2019 to 2022.
  • The results showed a genomic predictive ability of 0.61 for yield, indicating that GP can be a valuable tool in barley breeding programs and offers a potential advantage over traditional breeding methods.
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  • Genotyping is the analysis of an organism's DNA to determine its genetic traits and has applications in fields like agriculture, biomedicine, and conservation.
  • Genetic markers are categorized into random markers (like RFLP and AFLP) and functional markers (like SCoT and SRAP), with the latter being less utilized in animal science despite their advantages.
  • This review provides an overview of the different genotyping markers available, their benefits and limitations, and emphasizes the need for more use of functional markers in genetic research.
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  • Computational biology integrates computer science with biology to analyze complex biological data on a large scale and develop predictive models.* -
  • In the 21st century, computational resources and AI are crucial in biological sciences, aiding in drug design and vaccine development to enhance human and animal welfare.* -
  • This review article highlights key computational resources and AI tools in vaccine research while also addressing their applications and limitations in the development process.*
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Crop yield and quality has increased globally during recent decades due to plant breeding, resulting in improved food security. However, climate change and shifts in human dietary habits and preferences display novel pressure on crop production to deliver enough quantity and quality to secure food for future generations. This review paper describes the current state-of-the-art and presents innovative approaches related to alien introgressions into wheat, focusing on aspects related to quality, functional characteristics, nutritional attributes, and development of novel food products.

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Fusarium head blight (FHB) is a significantly important disease in cereals primarily caused by Fusarium species. FHB control is largely executed through chemical strategies, which are costlier to sustainable wheat production, resulting in leaning towards sustainable sources such as resistance breeding and biological control methods for FHB. The present investigation was aimed at evaluating newly identified bacterial consortium (BCM) as biocontrol agents for FHB and understanding the morpho-physiological traits associated with the disease resistance of spring wheat.

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Microwave (MW) heating has gained significant attention in food industries and biomass-to-biofuels through pyrolysis over conventional heating. However, constraints for promoting MW heating related to the use of different MW absorbers are still a major concern that needs to be investigated. The present study was conducted to explore the MW heating performance of biochar as a low-cost MW absorber for performing pyrolysis.

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Challenges of climate change and growth population are exacerbated by noticeable environmental changes, which can increase the range of plant diseases, for instance, net blotch (NB), a foliar disease which significantly decreases barley ( L.) grain yield and quality. A resistant germplasm is usually identified through visual observation and the scoring of disease symptoms; however, this is subjective and time-consuming.

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Article Synopsis
  • - Faba bean is a globally cultivated legume that shows promise for increasing plant-based protein production, which is essential for sustainable food systems.
  • - A study involving 220 faba bean varieties aimed to assess phenotypic diversity, analyze the effects of breeding on traits, and identify genetic markers through a genome-wide association study (GWAS).
  • - The research found significant genetic variation for key traits, demonstrated correlations between yield and certain agronomic factors, and discovered novel genetic markers linked to flowering time and other traits, highlighting the impact of breeding on the crop.
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Genomic selection, the application of genomic prediction (GP) models to select candidate individuals, has significantly advanced in the past two decades, effectively accelerating genetic gains in plant breeding. This article provides a holistic overview of key factors that have influenced GP in plant breeding during this period. We delved into the pivotal roles of training population size and genetic diversity, and their relationship with the breeding population, in determining GP accuracy.

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Climate change-induced drought has an effect on the nutritional quality of wheat. Here, the impact of drought at different plant stages on mineral content in mature wheat was evaluated in 30 spring-wheat lines of diverse backgrounds (modern, old and wheat-rye-introgressions). Genotypes with rye chromosome 3R introgression showed a high accumulation of several important minerals, including Zn and Fe, and these also showed stability across drought conditions.

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  • Spatiotemporal soil heterogeneity affects crop growth by creating cycles of edaphic stress, but our understanding of how roots respond to these varying conditions is limited.
  • The text introduces a framework that differentiates between two types of root responses: plasticity (persistent responses) and elasticity (reversible responses upon stress relief).
  • The study suggests that plasticity becomes more advantageous than elasticity as the number of stress cycles increases and when these responses result in higher energy gains, paving the way for future research on how crops can adapt to uneven soil environments.
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Common scab (CS) is a major bacterial disease causing lesions on potato tubers, degrading their appearance and reducing their market value. To accurately grade scab-infected potato tubers, this study introduces "ScabyNet", an image processing approach combining color-morphology analysis with deep learning techniques. ScabyNet estimates tuber quality traits and accurately detects and quantifies CS severity levels from color images.

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Climate change and global food security efforts are driving the need for adaptable crops in higher latitude temperate regions. To achieve this, traits linked with winter hardiness must be introduced in winter-type crops. Here, we evaluated the freezing tolerance (FT) of a panel of 160 winter wheat genotypes of Nordic origin under controlled conditions and compared the data with the winter hardiness of 74 of these genotypes from a total of five field trials at two locations in Norway.

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Septoria tritici blotch (STB) is a destructive foliar diseases threatening wheat grain yield. Wheat breeding for STB disease resistance has been identified as the most sustainable and environment-friendly approach. In this work, a panel of 316 winter wheat breeding lines from a commercial breeding program were evaluated for STB resistance at the seedling stage under controlled conditions followed by genome-wide association study (GWAS) and genomic prediction (GP).

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Wheat production and end-use quality are severely threatened by drought and heat stresses. This study evaluated stress impacts on phenotypic and gluten protein characteristics of eight spring wheat genotypes (Diskett, Happy, Bumble, SW1, SW2, SW3, SW4, and SW5) grown to maturity under controlled conditions (Biotron) using RGB imaging and size-exclusion high-performance liquid chromatography (SE-HPLC). Among the stress treatments compared, combined heat-drought stress had the most severe negative impacts on biomass (real and digital), grain yield, and thousand kernel weight.

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Spring wheat is an economically important crop for Scandinavia and its cultivation is likely to be affected by climate change. The current study focused on wheat yield in recent years, during which climate change-related yield fluctuations have been more pronounced than previously observed. Here, effects of the environment, together with the genotype and fungicide treatment was evaluated.

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Article Synopsis
  • * A total of 770 CRC samples were examined, revealing 170 significant DEGs, and a prognostic classification model based on 33 important genes achieved perfect accuracy and performance metrics.
  • * Further analysis highlighted the GLP2R and VSTM2A genes, which were downregulated in tumor samples and correlated with immune cell infiltration, suggesting their critical roles in CRC progression and immune response suppression.
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Linkage disequilibrium (LD)-based haplotyping with subsequent SNP tagging improved the genomic prediction accuracy up to 0.07 and 0.092 for Fusarium head blight resistance and spike width, respectively, across six different models.

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Barley ( L.) is the fourth most important cereal crop based on production and cultivated area. Biotic stresses, especially fungal diseases in barley, are devastating, incurring high possibilities of absolute yield loss.

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