60 results match your criteria: "Institute of Systems Analysis and Computer Science "A. Ruberti"[Affiliation]"

Article Synopsis
  • Pancreatic ductal adenocarcinoma (PDAC) is resistant to immune checkpoint inhibitors due to its complex tumor and immune microenvironment, necessitating strategies to enhance immune response.
  • The study involved preclinical models of PDAC to test the effects of intratumoral injection of the Toll-like receptor 9 agonist IMO-2125, both alone and in combination with anti-PD1 therapy.
  • Results showed that IMO-2125 successfully triggered immune responses to combat local and distant tumors, particularly in high immunogenic subtypes, and that combining it with anti-PD1 improved outcomes even in less immunogenic cancers by creating a more favorable immune environment.
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The Histamine and Multiple Sclerosis Alliance: Pleiotropic Actions and Functional Validation.

Curr Top Behav Neurosci

September 2022

IRCCS Santa Lucia Foundation-Preclinical Neuroscience, Rome, Italy.

Multiple sclerosis (MS) is a disease with a resilient inflammatory component caused by accumulation into the CNS of inflammatory infiltrates and macrophage/microglia contributing to severe demyelination and neurodegeneration. While the causes are still in part unclear, key pathogenic mechanisms are the direct loss of myelin-producing cells and/or their impairment caused by the immune system. Proposed etiology includes genetic and environmental factors triggered by viral infections.

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Hepatic miR-144 Drives Fumarase Activity Preventing NRF2 Activation During Obesity.

Gastroenterology

December 2021

Center for Infectious Medicine (CIM), Department of Medicine, Karolinska Institutet, Huddinge, Sweden. Electronic address:

Background And Aims: Oxidative stress plays a key role in the development of metabolic complications associated with obesity, including insulin resistance and the most common chronic liver disease worldwide, nonalcoholic fatty liver disease. We have recently discovered that the microRNA miR-144 regulates protein levels of the master mediator of the antioxidant response, nuclear factor erythroid 2-related factor 2 (NRF2). On miR-144 silencing, the expression of NRF2 target genes was significantly upregulated, suggesting that miR-144 controls NRF2 at the level of both protein expression and activity.

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Fly for ALS: Drosophila modeling on the route to amyotrophic lateral sclerosis modifiers.

Cell Mol Life Sci

September 2021

Preclinical Neuroscience, IRCCS Fondazione Santa Lucia, Via del Fosso di Fiorano 65, 00143, Rome, Italy.

Amyotrophic lateral sclerosis (ALS) is a rare, devastating disease, causing movement impairment, respiratory failure and ultimate death. A plethora of genetic, cellular and molecular mechanisms are involved in ALS signature, although the initiating causes and progressive pathological events are far from being understood. Drosophila research has produced seminal discoveries for more than a century and has been successfully used in the past 25 years to untangle the process of ALS pathogenesis, and recognize potential markers and novel strategies for therapeutic solutions.

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Assessing the impact of data-driven limitations on tracing and forecasting the outbreak dynamics of COVID-19.

Comput Biol Med

August 2021

Institute for Systems Analysis and Computer Science "Antonio Ruberti", National Research Council, Rome, Italy; Department of Computer, Control and Management Engineering "A. Ruberti" (DIAG), Sapienza University of Rome, Rome, Italy. Electronic address:

The availability of the epidemiological data strongly affects the reliability of several mathematical models in tracing and forecasting COVID-19 pandemic, hampering a fair assessment of their relative performance. The marked difference between the lethality of the virus when comparing the first and second waves is an evident sign of the poor reliability of the data, also related to the variability over time in the number of performed swabs. During the early epidemic stage, swabs were made only to patients with severe symptoms taken to hospital or intensive care unit.

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Article Synopsis
  • SARS-CoV-2 leads to COVID-19, which can cause severe health issues like respiratory problems and even death in about 2.15% of infected individuals.
  • Survivors often experience persistent post-COVID-19 syndrome (PPCS) with symptoms such as fatigue, memory loss, and trouble concentrating.
  • A study of 117 post-COVID-19 survivors found a significant increase in biological age and telomere shortening compared to 144 COVID-19-free individuals, suggesting possible epigenetic changes, especially in younger patients.
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Seven Mathematical Models of Hemorrhagic Shock.

Comput Math Methods Med

November 2021

National Research Council of Italy, Institute for Biomedical Research and Innovation, Via Ugo La Malfa, 153, 90146 Palermo, Italy.

Although mathematical modelling of pressure-flow dynamics in the cardiocirculatory system has a lengthy history, readily finding the appropriate model for the experimental situation at hand is often a challenge in and of itself. An ideal model would be relatively easy to use and reliable, besides being ethically acceptable. Furthermore, it would address the pathogenic features of the cardiovascular disease that one seeks to investigate.

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The continuous adherence to the conventional "one target, one drug" paradigm has failed so far to provide effective therapeutic solutions for heterogeneous and multifactorial diseases as amyotrophic lateral sclerosis (ALS), a rare progressive and chronic, debilitating neurological disease for which no cure is available. The present study is aimed at finding innovative solutions and paradigms for therapy in ALS pathogenesis, by exploiting new insights from Network Medicine and drug repurposing strategies. To identify new drug-ALS disease associations, we exploited SAveRUNNER, a recently developed network-based algorithm for drug repurposing, which quantifies the proximity of disease-associated genes to drug targets in the human interactome.

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Where and Why Modeling Amyotrophic Lateral Sclerosis.

Int J Mol Sci

April 2021

Preclinical Neuroscience, IRCCS Santa Lucia Foundation, 00143 Rome, Italy.

Over the years, researchers have leveraged a host of different in vivo models in order to dissect amyotrophic lateral sclerosis (ALS), a neurodegenerative/neuroinflammatory disease that is heterogeneous in its clinical presentation and is multigenic, multifactorial and non-cell autonomous. These models include both vertebrates and invertebrates such as yeast, worms, flies, zebrafish, mice, rats, guinea pigs, dogs and, more recently, non-human primates. Despite their obvious differences and peculiarities, only the concurrent and comparative analysis of these various systems will allow the untangling of the causes and mechanisms of ALS for finally obtaining new efficacious therapeutics.

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The metastatic cancer disease represents the real and urgent clinical need in oncology. Therefore, an understanding of the complex molecular mechanisms sustaining the metastatic cascade is critical to advance cancer therapies. Recent studies highlight how redox signaling influences the behavior of metastatic cancer cells, contributes to their travel in bloodstream from the primary tumor to the distant organs and conditions the progression of the micrometastases or their dormant state.

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Huntington's disease (HD) is a life-threatening neurodegenerative disorder. Altered levels and functions of the purinergic ionotropic P2X7 receptors (P2X7Rs) have been found in animal and cellular models of HD, suggesting their possible role in the pathogenesis of the disease; accordingly, the therapeutic potential of P2X7R antagonists in HD has been proposed. Here we further investigated the effects of P2X7R ligands in and HD experimental models.

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Maturity-onset diabetes of the young (MODY) type 2 is caused by heterozygous inactivating mutations in the gene encoding glucokinase (GCK), a pivotal enzyme for glucose homeostasis. In the pancreas GCK regulates insulin secretion, while in the liver it promotes glucose utilization and storage. We showed that silencing the orthologs and results in a MODY-2-like hyperglycemia.

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Hemorrhagic shock is the number one cause of death on the battlefield and in civilian trauma as well. Mathematical modeling has been applied in this context for decades; however, the formulation of a satisfactory model that is both practical and effective has yet to be achieved. This paper introduces an upgraded version of the 2007 Zenker model for hemorrhagic shock termed the ZenCur model that allows for a better description of the time course of relevant observations.

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Reconstructing Nonparametric Productivity Networks.

Entropy (Basel)

December 2020

Department of Accounting, Economics and Finance, Southeast Missouri State University, Cape Girardeau, MO 63701, USA.

Network models provide a general representation of inter-connected system dynamics. This ability to connect systems has led to a proliferation of network models for economic productivity analysis, primarily estimated non-parametrically using Data Envelopment Analysis (DEA). While network DEA models can be used to measure system performance, they lack a statistical framework for inference, due in part to the complex structure of network processes.

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Objective/purpose: The aryl hydrocarbon receptor (AHR) pathway plays a critical role in the biology of Growth Hormone (GH)-secreting pituitary tumor (somatotropinoma). Germline rs2066853 variant was found to be more frequent among acromegaly patients and associated with a more severe disease with larger invasive somatropinoma, and with resistance to somatostatin analogs treatment in patients living in polluted areas. However, no somatic changes in gene have been reported so far in acromegaly patients.

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Article Synopsis
  • - The WHO reports around 41 million annual deaths globally from age-related non-communicable chronic diseases, highlighting the need for strategies to manage cell senescence and aging.
  • - Cell senescence contributes to aging-related dysfunction; researchers are investigating existing anticancer drugs for their potential to treat senescence and improve lifespan in animal studies.
  • - Senomorphics aim to restore healthy cellular functions, while senolytics induce the death of senescent cells, potentially leading to new treatments for chronic diseases based on these properties.
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Article Synopsis
  • Epigenetics examines how both genetic and environmental factors influence heritable changes in traits, focusing on mechanisms like DNA methylation and chromatin remodeling.
  • COVID-19, caused by the SARS-CoV-2 virus, varies in severity based on individual factors like age and health.
  • This review explores how viruses, particularly coronaviruses, impact the host's epigenome and emphasizes the need for further research on effective treatments and vaccines, including epigenetic therapies, to combat COVID-19.
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Prostate cancer (PCa) is a sex-steroid hormone-dependent cancer in which estrogens play a critical role in both initiation and progression. Recently, several long non-coding RNAs (lncRNAs) have been associated with PCa and are supposedly playing a pivotal role in the biology and progression of this type of cancer. In this review, we focused on some lncRNAs that are known for their androgen and estrogen transcriptional responsiveness in PCa.

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Article Synopsis
  • - RNA epigenetics is a cutting-edge area of research focusing on RNA modifications and their complex role in both normal and disease biology, particularly how they affect physiology and pathophysiology.
  • - There are shared regulatory molecules between RNA and DNA/chromatin structures, but some are unique to RNA, indicating a distinct pathway for potential therapeutic targets.
  • - The review aims to highlight RNA epigenetic changes that could lead to new treatments for cardiovascular disease, emphasizing their clinical relevance and potential for translation into therapies.
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Remote synchronization (RS) is characterized by the appearance of phase coherence between oscillators that do not directly interact through a structural link in a network but exclusively through other units that are not synchronized or more weakly synchronized with them. This form of phase synchronization was observed initially in starlike motifs and later in random networks. In this paper, we report on an experimental setup for the analysis of RS in networks of Stuart-Landau oscillators and in particular investigate the behavior of tree structures focusing on the path to synchronization, that is, on the analysis of how synchronization emerges as the coupling strength increases from zero.

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: KDM5 enzymes are H3K4 specific histone demethylases involved in transcriptional regulation and DNA repair. These proteins are overexpressed in different kinds of cancer, including breast, prostate and bladder carcinomas, with positive effects on cancer proliferation and chemoresistance. For these reasons, these enzymes are potential therapeutic targets.

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Background: Head and neck squamous cell carcinoma (HNSCC) is the sixth leading cancer worldwide. They are typically characterized by a high incidence of local recurrence, which is the most common cause of death in HNSCC patients. TP53 is the most frequently mutated gene in HNSCC and patients carrying TP53 mutations are associated with a higher probability to develop local recurrence.

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