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This special volume of Biochimica et Biophysica Acta - Molecular Basis of Disease showcases a transformative era in biomedical research, driven by the convergence of multi-omics technologies, artificial intelligence (AI), and systems biology. The volume is focused across eight thematic sections-spanning cancer, inflammatory and infectious diseases, neurodegeneration, cardiovascular health, autophagy, respiratory disease, and heme biology-this volume highlights how integrative methodologies are helping to simplify the complexity of disease mechanisms. These studies discuss not only biomarker discovery and disease mechanisms, but also how redox biology, lipidomics, machine learning, and proteogenomics are redefining pathophysiological frameworks. From spatial omics in colorectal cancer to ferroptosis in asthma and sepsis, these contributions demonstrate the translational power of different network analysis and validations. Key challenges-including standardization, ethical integration of AI, and global infrastructure gaps-are also addressed as future imperatives. Together, the articles in this volume serve not just as a repository of high-impact findings, but as an example of the roadmap toward precision medicine where diagnostics, therapies, and prognoses are tailored to the molecular individuality of each patient. This collection establishes BBA - Molecular Basis of Disease as a leading platform for next-generation disease biology and personalized healthcare innovation.
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http://dx.doi.org/10.1016/j.bbadis.2025.168027 | DOI Listing |
HIV-induced gut microbiota dysbiosis perpetuates mucosal barrier disruption and systemic inflammation despite antiretroviral therapy (ART), creating a tumor-permissive microenvironment. This review synthesizes evidence linking HIV-associated microbial alterations to oncogenesis through three convergent metabolic axes: (1) butyrate deficiency impairing epithelial energy metabolism and anti-tumor immunity; (2) tryptophan metabolism dysregulation compromising gut barrier integrity via depletion and -mediated phenylethylamine overproduction; and (3) vitamin B biosynthesis defects disrupting DNA repair and Th1/Th2 balance. Comparative profiling across HIV-associated malignancies-non-Hodgkin lymphoma, cervical cancer, hepatocellular carcinoma, and lung cancer-reveals conserved dysbiotic signatures: depletion of anti-inflammatory taxa (, ) and expansion of pro-inflammatory genera (, ).
View Article and Find Full Text PDFMediators Inflamm
September 2025
The First Affiliated Hospital of Ningbo University, Ningbo, China.
Crohn's disease (CD) is a chronic inflammatory disease characterized by complex immune dysregulation in which the identification of key molecular drivers is critical for the advancement of diagnostic and therapeutic approaches. In this study, we integrated transcriptomic data from multiple cohorts and applied three machine learning algorithms-Random forest, support vector machine recursive feature elimination (SVM-RFE), and Least Absolute Shrinkage and Selection Operator (LASSO)-to robustly identify key gene, converging on CSF3R as a top candidate. Mendelian randomization (MR) analysis supported a causal role of CSF3R in CD pathogenesis (OR = 1.
View Article and Find Full Text PDFCell Regen
September 2025
Center for Translational Neural Regeneration Research, Sir Run Run Shaw Hospital, Zhejiang University School of Medicine, Hangzhou, Zhejiang, 310016, China.
Neural regeneration stands at the forefront of neuroscience, aiming to repair and restore function to damaged neural tissues, particularly within the central nervous system (CNS), where regenerative capacity is inherently limited. However, recent breakthroughs in biotechnology, especially the revolutions in genetic engineering, materials science, multi-omics, and imaging, have promoted the development of neural regeneration. This review highlights the latest cutting-edge technologies driving progress in the field, including optogenetics, chemogenetics, three-dimensional (3D) culture models, gene editing, single-cell sequencing, and 3D imaging.
View Article and Find Full Text PDFEnviron Res
September 2025
Department of Biological Sciences, Bioinformatics Research Center, North Carolina State University, Raleigh, NC, USA.
Organophosphate flame retardants (OPFRs) are widely used environmental contaminants with suspected developmental neurotoxicity, yet their stage-specific molecular impacts and potential relevance to autism spectrum disorder (ASD) remain poorly defined. We integrated transcriptomic and lipidomic analyses from two rat models to investigate OPFR-induced disruption across early neurodevelopment. In dataset GSE148266, fetal forebrain and placenta were analyzed following in utero OPFR exposure; in dataset GSE211430, neonatal cortical RNA-seq and lipidomics were profiled after postnatal exposure to triphenyl phosphate and isopropylated triaryl phosphate (1,000 μg/day; n = 10/sex/group).
View Article and Find Full Text PDFBiology (Basel)
July 2025
Department of Biology, College of Science and Technology, Wenzhou-Kean University, 88 Daxue Road, Ouhai, Wenzhou 325060, China.
The global antimicrobial resistance crisis demands innovative strategies to combat bacterial infections, including those caused by drug-sensitive pathogens that evade treatment through biofilm formation or metabolic adaptations. Here, we demonstrate that Squama Manitis extract (SME)-a traditional Chinese medicine component-exhibits broad-spectrum bactericidal activity against clinically significant pathogens, including both Gram-positive () and Gram-negative () species (MIC = 31.25 mg/mL), achieving significant reduction in bacterial viability within 24 h.
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