98%
921
2 minutes
20
Background: Urosepsis is a subset of sepsis with a high mortality rate. Currently, the ranking of urosepsis in sepsis etiology is on the rise. Our goal is to use machine learning (ML) methods to construct and validate an interpretable prognosis prediction model for patients with urosepsis.
Method: Data were collected from the Intensive Care Medical Information Mart IV database version 3.1 and divided into a training cohort and a validation cohort in a 7:3 ratio. Random Forest (RF), Lasso, Boruta, and eXtreme Gradient Boosting (XGBoost) were used to identify the most influential variables in the model development dataset, and the optimal variables were selected based on achieving the λ value. Model development includes seven machine learning methods and ten cross validations. Accuracy and Decision Curve Analysis (DCA) were used to evaluate the performance of the model in order to select the optimal model. Internal validation of the model included area under the ROC curve (AUC), sensitivity, specificity, Matthews correlation coefficient, and F1-score. Finally, SHapley Additive exPlans (SHAP) was used to explain ML models.
Result: A total of 1389 patients with urosepsis were included. Optimal predictors were selected through statistical regularization, yielding a parsimonious set of 9 variables for model development. The performance of XGBoost model is the best and the accuracy of XGBoost was 0.818, with an AUC of 0.904 (95% CI: 0.886-0.923). The internal validation accuracy was 0.797, AUC was 0.869 (95% CI: 0.834-0.904), sensitivity was 0.797, specificity was 0.752, Matthews correlation coefficient was 0.597, and F1-score was 0.791. This indicates that the predictive model performs well in internal validation. SHAP-based summary graphs and diagrams were used to globally explain the XGBoost model.
Conclusion: ML demonstrates strong prognostic capability in urosepsis, with the SHAP method providing clinically intuitive explanations of model predictions. This enables clinicians to identify critical prognostic factors and personalize treatments. While our model achieved high predictive accuracy, its retrospective derivation from a single-center database necessitates external validation in diverse populations, which should be addressed through future prospective multicenter studies to establish clinical generalizability.
Download full-text PDF |
Source |
---|---|
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC12370708 | PMC |
http://dx.doi.org/10.3389/fcimb.2025.1623109 | DOI Listing |
Pharmacotherapy
September 2025
Department of Biomedical Informatics, School of Medicine, Vanderbilt University Medical Center, Nashville, Tennessee, USA.
Background: Omeprazole, a widely used proton pump inhibitor, has been associated with rare but serious adverse events such as myopathy. Previous research suggests that concurrent use of omeprazole with fluconazole, a potent cytochrome P450 (CYP) 2C19/3A4 inhibitor, may increase the risk of myopathy. However, the contribution of genetic polymorphisms in CYP enzymes remains unclear.
View Article and Find Full Text PDFJ Magn Reson Imaging
September 2025
Department of Neurology, Dell Medical School, University of Texas at Austin, Austin, Texas, USA.
Background: Cerebrovascular reactivity reflects changes in cerebral blood flow in response to an acute stimulus and is reflective of the brain's ability to match blood flow to demand. Functional MRI with a breath-hold task can be used to elicit this vasoactive response, but data validity hinges on subject compliance. Determining breath-hold compliance often requires external monitoring equipment.
View Article and Find Full Text PDFJ Mater Chem B
September 2025
Major in Bionano Engineering, School of Bio-Pharmaceutical Convergence, Hanyang University, Ansan, 155-88, Republic of Korea.
Membrane proteins are essential bio-macromolecules involved in numerous critical biological processes and serve as therapeutic targets for a wide range of modern pharmaceuticals. Small amphipathic molecules, called detergents or surfactants, are widely used for the isolation and structural characterization of these proteins. A key requirement for such studies is their ability to maintain membrane protein stability in aqueous solution, a task where conventional detergents often fall short.
View Article and Find Full Text PDFACS Appl Mater Interfaces
September 2025
Leibniz-Institut für Katalyse e.V. (LIKAT), Albert-Einstein-Str. 29a, Rostock 18059, Germany.
Metal-organic frameworks (MOFs) are transformative platforms for heterogeneous catalysis, but distinguishing atomically dispersed metal sites from subnanometric clusters remains a major challenge. This often demands the integration of multiple characterization techniques, many of which either lack the resolving power to distinguish active sites from their surrounding environments (e.g.
View Article and Find Full Text PDF