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Background: Fungi play essential ecological roles and have been utilized by humans for diverse applications such as industrial enzyme production or as sources of bioactive compounds. Recent research has highlighted the Amphisphaeriales order (Ascomycota) as promising producers of secondary metabolites of pharmaceutical importance. Within this family, the recently established genus Neoarthrinium includes species such as N. brasiliense, N. lithocarpicola, N. moseri, N. trachycarpi, and N. urticae. Existing literature has primarily focused on the taxonomy and phylogeny of Neoarthrinium, leaving its physiology, ecology, and metabolic potential unexplored.
Results: This study presents the first investigation of the metabolic and genomic potential of N. moseri. We describe the isolation of two South-Asian N. moseri strains and the genome sequencing of these strains alongside the Colombian ex-type strain for the species. Comparative genome analysis reveals an exceptionally high number of biosynthetic gene clusters (BGCs), surpassing those of many other fungi in the Amphisphaeriales order. Additionally, the genome of N. moseri contains a diverse repertoire of carbohydrate-active enzymes (CAZymes), supporting its hypothesized ecological role as a phyllosphere fungus (putatively an endophyte and/or saprotroph). Ecophysiological assays, including BIOLOG phenotyping, demonstrate its ability to utilize a broad range of carbon sources, emphasizing ecological versatility.
Conclusions: This study highlights N. moseri as a promising candidate for secondary metabolite discovery, providing foundational insights into the metabolic and genomic potential of the Neoarthrinium genus and related fungi.
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http://dx.doi.org/10.1186/s12866-025-04274-z | DOI Listing |
Environ Microbiol Rep
October 2025
Reference Center for Lactobacilli (CERELA-CONICET), San Miguel de Tucumán, Argentina.
Limosilactobacillus fermentum CRL2085, isolated from feedlot cattle rations, displayed high efficiency as a probiotic when administered to animals. A comprehensive genomic analysis was performed to elucidate the genetic basis underlying its probiotic potential. Fifteen genomic islands and CRISPR-Cas elements were identified in its genome.
View Article and Find Full Text PDFCancer Rep (Hoboken)
September 2025
Division of Gastroenterology, Department of Internal Medicine, Asahikawa Medical University, Asahikawa, Japan.
Background: Cancer of unknown primary (CUP) is a challenging malignancy characterized by metastatic tumors with an unidentified primary site, even after extensive pathological and radiographic evaluation. Recent advancements in gene expression profiling and comprehensive genomic profiling (CGP) using next-generation sequencing (NGS) have enabled the identification of potential tissue origins, thereby facilitating personalized treatment strategies. Although most cases of CUP present as adenocarcinomas or poorly differentiated tumors, the treatment remains largely empirical, with limited success from molecularly tailored therapies.
View Article and Find Full Text PDFMol Ecol
September 2025
Museum of Vertebrate Zoology, University of California Berkeley, Berkeley, California, USA.
Many North American game animals experienced severe population declines during the 19th century due to market hunting. However, estimates of the timing and magnitude of these declines often rely on anecdotal evidence, which makes it difficult to understand the lasting impacts of hunting pressures versus climate or landscape changes on the genetic diversity of contemporary populations. Historical reports suggest the California quail (Callipepla californica) suffered more significant hunting pressure in the late 19th century relative to either Gambel's (Callipepla gambelii) or mountain quail (Oreortyx pictus).
View Article and Find Full Text PDFNan Fang Yi Ke Da Xue Xue Bao
August 2025
Department of Urology, Third Affiliated Hospital of Southern Medical University, Guangzhou 510000, China.
Objectives: To identify immunosuppressive neutrophil subsets in patients with prostate cancer (PCa) and construct a risk prediction model for prognosis and immunotherapy response of the patients based on these neutrophil subsets.
Methods: Single-cell and transcriptome data from PCa patients were collected from the Gene Expression Omnibus (GEO) and The Cancer Genome Atlas (TCGA). Neutrophil subsets in PCa were identified through unsupervised clustering, and their biological functions and effects on immune regulation were analyzed by functional enrichment, cell interaction, and pseudo-time series analyses.
DNA Res
September 2025
Key Laboratory of National Forestry and Grassland Administration on Plant Conservation and Utilization in Southern China, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou 510650, China.
Sauvagesia rhodoleuca is an endangered species endemic to southern China. Due to human activities, only six fragmented populations remain in Guangdong and Guangxi. Despite considerable conservation efforts, its demographic history and evolution remain poorly understood, particularly from a genomic perspective.
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