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Quantum transport-based DNA sequencing is emerging as a promising technique in genetic analysis, offering fast, precise, and scalable decoding of genetic information, holding significant potential for applications in human biology and personalized medicine. Given the recent developments in supervised machine learning-coupled nanopore and nanochannel technology, predicting and classifying the labeled DNA nucleotides is now feasible with precision and accuracy. However, the next challenge arises as conventional analysis methods struggle to handle the vast amount of data generated by high-throughput DNA sequencing, particularly when dealing with complex spatial patterns in quantum transport readouts. Here, we propose an unsupervised machine learning approach utilizing a MoS/WSe heterojunction to cluster the transmission footprints of unlabeled DNA nucleotides. Our approach streamlines the clustering of nucleotide signals, minimizing manual efforts while improving the speed and accuracy of nucleotide identification, making nanopore/nanochannel-based sequencing more scalable and precise. This study paves a new path toward clustering of DNA transmission readouts, providing a quick platform for the interpretation of genetic code.
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http://dx.doi.org/10.1021/acsami.5c11122 | DOI Listing |
Front Vet Sci
August 2025
Faculty of Veterinary Medicine, Lusófona University-Lisbon University Centre, Lisbon, Portugal.
Introduction: is a well-recognized etiologic agent of upper respiratory tract disease in tortoises. Although frequently reported in both captive and wild populations across Europe, its occurrence in Portugal had not been previously documented. This study aimed to investigate the presence of in apparently healthy captive tortoises in mainland Portugal and to evaluate potential host- and management-related factors associated with infection.
View Article and Find Full Text PDFBioinform Adv
September 2025
Data Science in Systems Biology, TUM School of Life Sciences, Technical University of Munich, Freising, 85354, Germany.
Summary: Cell-type deconvolution is widely applied to gene expression and DNA methylation data, but access to methods for the latter remains limited. We introduce , a new R package that simplifies access to DNA methylation-based deconvolution methods predominantly for blood data, and we additionally compare their estimates to those from gene expression and experimental ground truth data using a unique matched blood dataset.
Availability And Implementation: is available at https://github.
Am J Clin Pathol
September 2025
Laboratory for Clinical Genomics and Advanced Technology (CGAT)-Department of Pathology and Laboratory Medicine, Dartmouth Hitchcock Medical Center, Lebanon, NH, United States.
Objective: Differentiating between the repertoire of immunoglobulin rearrangements is important in guiding diagnoses and management of B-cell lymphoma processes. A subset of these disease entities, such as chronic lymphocytic leukemia (CLL) and mantle cell lymphoma (MCL), can show distinct genomic profiles with a shared cell of origin. In this report, we describe a rare case in which differentiating between the immunoglobulin family of rearrangements (IGH, IGK, IGL) with optical genome mapping (OGM) helped revise the clinical suspicion of CLL.
View Article and Find Full Text PDFBiophys J
September 2025
Biophysical and Biomedical Measurement Group, Microsystems and Nanotechnology Division, Physical Measurement Laboratory, National Institute of Standards and Technology, Gaithersburg, MD, USA. Electronic address:
Macromolecular structure is central to biology. Yet, not all biomolecules have a well-defined fold. Intrinsically disordered regions are ubiquitous, conveying a versatility to function even in otherwise folded structures.
View Article and Find Full Text PDFRedox Biol
September 2025
Department of Radiation Oncology, Shanghai Proton and Heavy Ion Center, Fudan University Cancer Hospital, Shanghai, 201321, China; Shanghai Key Laboratory of Radiation Oncology, Shanghai, 201321, China; Shanghai Engineering Research Center of Proton and Heavy Ion Radiation Therapy, Shanghai 201321,
Glioblastoma (GBM), the most prevalent and lethal primary malignancy of the central nervous system, remains refractory to conventional photon radiotherapy due to inherent limitations in dose distribution. Although carbon ion radiotherapy offers distinct advantages, including its characteristic Bragg peak deposition and superior relative biological effectiveness, its clinical application is constrained by high costs and increased toxicity. This study explores the radiobiological interactions underlying a mixed carbon ion-photon irradiation regimen, a promising strategy in advanced particle therapy.
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