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Understanding the functional connectivity and behavior of 3D cell cultures and organoids requires monitoring electrical activity across multiple planes. However, traditional planar microelectrode arrays (MEAs) are limited to surface recordings and struggle to capture signals from deeper layers. Additionally, current fabrication methods face challenges such as prolonged production times and limited design flexibility, which hinder the development of high-precision 3D electrode arrays and affect the quality of cell-electrode coupling. To overcome these obstacles, we introduce a new approach that integrates inkjet printing with focused ion beam (FIB) milling and electrodeposition, resulting in highly customizable 3D MEAs. The FIB milling enables the creation of precise electrode openings at predetermined locations, which is essential for selective recordings within the tissue. The MEAs, fabricated on glass substrates, incorporate high-aspect-ratio (up to 44:1) electrode structures with heights up to 1 mm, a pitch of 500 μm, and electrode openings of 3 and 6 μm, providing the necessary resolution for targeted measurements. Impedance and noise characteristics (down to a root-mean-square of (RMS) noise of 0.2 pA) for amperometric measurements were assessed in dependence on the electrode size. We demonstrate the effectiveness of these 3D MEAs by recording electrophysiological activity from hiPSC-derived cortical organoids (age: 24 month) both in situ and after 10 days of cultivation of the organoid directly on the MEA. This approach facilitates in vitro studies of neural activity in organoids and holds promise for high-throughput, selective amperometric analyses in normal and pathologically altered conditions.
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http://dx.doi.org/10.1021/acssensors.4c03740 | DOI Listing |
Proc Natl Acad Sci U S A
September 2025
Department of Chemical and Structural Biology, Weizmann Institute of Science, Rehovot 7610001, Israel.
We applied micro-computed tomography, high-resolution cryo-scanning electron microscopy (SEM) combined with cathodoluminescence, and cryo-focused ion beam Milling-SEM to perform three-dimensional imaging of human atherosclerotic tissues with tens of nanometers resolution, under hydrated, near-native conditions with minimal sample processing. The same technology was applied to cultured macrophages exposed to cholesterol crystals, and the observations made on the macrophages were compared to those made on the pathological tissue. We observed that cholesterol crystal digestion and, eventually, cholesterol crystal clearance occurs in the advanced human plaques through cellular processing.
View Article and Find Full Text PDFNanoscale
September 2025
National Research University of Electronic Technology - MIET, Bld. 1, Shokin Square, Zelenograd, Moscow, 124498, Russia.
The focused ion beam (FIB) technique has been established as a powerful nanofabrication tool. The application of this technique is limited due to the implantation of beam ions into the substrate, which is difficult to overcome and can be detrimental in many cases. Herein, we report that in comparison with the commonly used smooth milling process, the amount of implanted gallium atoms in the near-surface region of fabricated structures can be significantly reduced when the ions strike a highly inclined sputtering front wall formed on the substrate surface during the edge milling process of the line-by-line beam scanning strategy.
View Article and Find Full Text PDFEMBO Rep
August 2025
Division of Structural Biology, Wellcome Trust Centre for Human Genetics, University of Oxford, Oxford, UK.
Direct visualization of HIV-1 nuclear import through the nuclear pore complex (NPC) presents a technical challenge due to the rarity of this process. To enable systematic investigation, we developed a robust in situ system that mimics HIV-1 nuclear import in a near-native context using isolated HIV-1 virus like particles (VLP) cores and permeabilized CD4 + T lymphocyte (CEM) cells. This approach supports docking and translocation of abundant viral cores through nuclear pores into the nucleus.
View Article and Find Full Text PDFCurr Opin Struct Biol
August 2025
Research Group CryoEM Technology, Max Planck Institute of Biochemistry, Martinsried, Germany. Electronic address:
Cryo-focused ion beam instruments to produce cellular thin sections for subsequent imaging by cryo-electron tomography have become an integral part of the methodologies for in situ structural biology, enabling high-resolution imaging of biological structures in their native environment. The application of these instruments has opened windows into cells that allowed unprecedented insights into the ultrastructure of cells and more recently, small multicellular organisms and tissues. While great strides have been made in the characterization of cryo-FIB milling and the streamlining of workflows with these tools, many limitations and technical challenges remain to be resolved.
View Article and Find Full Text PDFACS Sens
August 2025
Neuroelectronics, Munich Institute of Biomedical Engineering, School of Computation, Information and Technology, Technical University of Munich, Hans-Piloty-Str. 1, 85748 Garching, Germany.
Understanding the functional connectivity and behavior of 3D cell cultures and organoids requires monitoring electrical activity across multiple planes. However, traditional planar microelectrode arrays (MEAs) are limited to surface recordings and struggle to capture signals from deeper layers. Additionally, current fabrication methods face challenges such as prolonged production times and limited design flexibility, which hinder the development of high-precision 3D electrode arrays and affect the quality of cell-electrode coupling.
View Article and Find Full Text PDF