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Herein, a new large Stokes shift fluorescent probe DGCA based on dansyl group modified tripeptide molecule (Gly-Cys-Ala-NH) was successfully synthesized. DGCA acts as a promising probe for simultaneous detection of Ag and Cu based on different response modes, which displayed fluorescence enhancement by Ag and fluorescence quenching by Cu in 100% aqueous solution. In addition, DGCA exhibited high sensitivity recognition of Ag and Cu, with the limits of detections (LODs) being 7.4 nM and 5.9 nM, respectively. Furthermore, the stoichiometry between DGCA and Ag/Cu was 1:1 by means of fluorescence titration, Job's plot, electro-spray ionization high-resolution mass spectrometry (ESI-HRMS) and theoretical calculation. The fluorescence changes of DGCA upon the addition of Ag and Cu were applied as an ultrasensitive logic gate at the molecular level. Due to low toxicity and good permeability, DGCA was successfully used for bioimaging Ag and Cu in living cells and zebrafish larvae. Moreover, it was also demonstrated that DGCA was suitable for the simultaneous detection of Ag and Cu in real samples. More importantly, the smartphone App with RGB Color Picker was employed to analyze the concentration of Ag and Cu with satisfactory results.
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http://dx.doi.org/10.1002/bio.70291 | DOI Listing |
Mikrochim Acta
September 2025
Pharmaceutical Analysis Research Center, Tabriz University of Medical Sciences, Tabriz, Iran.
Salmonella Typhimurium (S. Typhimurium) is one of the most common food-borne diseases, highlighted as the top food-borne bacterial pathogen in the world with a low infectious dose (1 CFU) and high mortality rate. It is commonly associated with numerous foods such as dairy products, protein sources (multiple types of meat, poultry, and eggs), and bakery products.
View Article and Find Full Text PDFPhotochem Photobiol Sci
September 2025
Department of Genetics and Plant Breeding, C. P. College of Agriculture, S. D. Agricultural University, Sardarkrushinagar, 385506, India.
The electromobility shift assay (EMSA) is a popular and productive molecular biology tool for studying protein-nucleic acid interactions. EMSA is a technique applied to the revelation of the binding dynamics of proteins, like transcription factors, to DNA or RNA. There are ample essential phases in the technique.
View Article and Find Full Text PDFLuminescence
September 2025
Department of Chemistry, Institute of Science, Banaras Hindu University, Varanasi, Uttar Pradesh, India.
A triphenyl-imidazole end-capped donor-acceptor type potential molecular probe 3 has been designed and synthesized. Probe 3 upon interaction with different classes of metal ions/anions and NPPs displayed high selectivity with CN anion (LOD = 20.42 nM) through fluorescence "turn-Off" response and a naked-eye sensitive visible color change.
View Article and Find Full Text PDFNucleic Acids Res
September 2025
Biomolecular Sciences Institute, Florida International University, Miami, FL 33199, United States.
Supercoiled (Sc) circular DNA, such as plasmids, are essential in molecular biology and hold strong therapeutic potential. However, they are typically produced in Escherichia coli, resulting in bacterial methylations, unnecessary sequences, and contaminants that hinder certain applications including clinical uses. These limitations could be avoided by synthesizing plasmids entirely in vitro, but synthesizing high-purity Sc circular DNA biochemically remains a significant technical challenge.
View Article and Find Full Text PDFNucleic Acids Res
September 2025
Department of Chemistry and Henry Eyring Center for Cell and Genome Science, University of Utah, Salt Lake City, UT 84112, United States.
Glycine is an important metabolite and cell signal in diverse organisms, yet tools to visualize intracellular glycine dynamics have not been developed. In this study, diverse and bright RNA-based glycine biosensors were developed by fusing the architecturally complex glycine riboswitch with Broccoli class fluorogenic aptamers. The brightest sensor with the highest activation, glyS, and its two-dye ratiometric counterpart, Pepper-glyS, allowed for visualization of a drug-induced accumulation of endogenous glycine in live Escherichia colicells.
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