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Here, we present a fluorogenic supramolecular host-guest system comprising cucurbit[7]uril (CB7) and a rationally designed rosamine fluorescent dye () tailored for super-resolution imaging applications. By strategically designing the -aryl moiety of the guest, we concomitantly quenched the dye's emission in its free form and achieved strong binding with the host. The formation of the complex suppresses quenching and encompasses a large fluorescence turn-ON effect. Experimental and theoretical studies revealed that CB7 complexation significantly improved the photophysical properties of , with a 6.4-fold fluorescence increase and 4.2-fold enhanced emission quantum yield. Further functionalization of with a HaloTag ligand or an NHS reactive group rendered it suitable for live-cell and immunofluorescence labeling, yielding specificity, negligible background, and a minimal fluorescence signal in the unbound state. The addition of CB7 drastically increased fluorescence, enabling conventional and stimulated emission depletion (STED) imaging with subdiffraction resolution. Furthermore, the turn-ON ability of the host-guest complex facilitated pseudo two-color sequential imaging of different protein combinations within the same acquisition channel. These results demonstrate the potential of this supramolecular system to enable an additional super-resolution imaging multiplexing modality through noncovalent chemistry.
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http://dx.doi.org/10.1021/jacs.5c06406 | DOI Listing |
IEEE Trans Biomed Eng
September 2025
Objective: Diffusion magnetic resonance imaging (dMRI) often suffers from low spatial and angular resolution due to inherent limitations in imaging hardware and system noise, adversely affecting the accurate estimation of microstructural parameters with fine anatomical details. Deep learning-based super-resolution techniques have shown promise in enhancing dMRI resolution without increasing acquisition time. However, most existing methods are confined to either spatial or angular super-resolution, disrupting the information exchange between the two domains and limiting their effectiveness in capturing detailed microstructural features.
View Article and Find Full Text PDFFront Neuroinform
August 2025
Department of Biomedical Sciences, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark.
Introduction: The advent of super-resolution microscopy revealed the membrane-associated periodic skeleton (MPS), a specialized neuronal cytoskeletal structure composed of actin rings spaced 190 nm apart by two spectrin dimers. While numerous ion channels, cell adhesion molecules, and signaling proteins have been shown to associate with the MPS, tools for accurate and unbiased quantification of their periodic localization remain scarce.
Methods: We developed Napari-WaveBreaker (https://github.
Front Biosci (Landmark Ed)
August 2025
University of Angers, MitoLab, Unité MITOVASC, UMR CNRS 6015, INSERM U1083, SFR ICAT, 49330 Angers, France.
The bioenergetic machinery of the cell is protected and structured within two layers of mitochondrial membranes. The mitochondrial inner membrane is extremely rich in proteins, including respiratory chain complexes, substrate transport proteins, ion exchangers, and structural fusion proteins. These proteins participate directly or indirectly in shaping the membrane's curvature and facilitating its folding, as well as promoting the formation of nanotubes, and proton-rich pockets known as cristae.
View Article and Find Full Text PDFMethods Appl Fluoresc
September 2025
Department of Biotechnology and Biophysics, University of Würzburg, Department of Biotechnology & Biophysics, Wuerzburg University, Am Hubland, Wuerzburg, other, 97074, GERMANY.
Super-resolution microscopy (SRM) has revolutionized fluorescence imaging enabling insights into the molecular organization of cells that were previously unconceivable. Latest developments now allow the visualization of individual molecules with nanometer precision and imaging with molecular resolution. However, translating these achievements to imaging under physiological conditions in cells remains challenging.
View Article and Find Full Text PDFAngew Chem Int Ed Engl
September 2025
Institute of Materiobiology, College of Sciences, Shanghai University, Shanghai, 200444, China.
Self-assembled DNA nanostructures have been popularly used to develop DNA-based electrochemical sensors by exploiting the nanoscale positioning capability of DNA origami. However, the impact of the electric field on the structural stability of the DNA origami framework and the activity of carried DNA probes remains to be explored. Herein, we employ DNA origami as structural frameworks for reversible DNA hybridization, and develop a single-molecule fluorescence imaging method to quantify electric field effects on DNA conformation and hybridization properties at the single-molecule level.
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