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Nuclear speckles (NS) and paraspeckles (PS) are adjacent yet distinct nuclear condensates that undergo stress-induced reorganization. Here, we identify a dual role for the splicing factor SRSF5 in coordinating the crosstalk between both condensates. Super-resolution imaging shows that SRSF5, while enriched in NS, also overlaps with the shell of a subset of PS. SRSF5 binds purine-rich sequences at the 5' end of NEAT1_2 promoting its alignment to PS shells and the formation of large PS cluster during stress. We propose that SRSF5 binding occurs transiently during PS maturation and must later be removed from NEAT1_2 by nuclear helicases. Inhibition of this remodeling by rocaglamide A, which locks helicases onto purine-rich RNA leads to the aberrant fusion of PS and NS, which can be partially rescued by acute SRSF5 depletion. Surprisingly, while short-term SRSF5 loss impairs PS formation, prolonged depletion activates a feedback loop involving intron retention and premature polyadenylation of TARDBP, reduction of TDP-43 levels and NEAT1_2 isoform switching, ultimately restoring PS clusters. Our findings reveal that SRSF5 serves both architectural and regulatory roles in PS biogenesis and that helicase-mediated remodeling is essential to maintain PS identity and function under stress. These insights uncover fundamental principles of nuclear body dynamics.
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http://dx.doi.org/10.1093/nar/gkaf713 | DOI Listing |
Genes (Basel)
August 2025
Department of Geriatrics, Donald W. Reynolds Institute on Aging, University of Arkansas for Medical Sciences, Little Rock, AR 72205, USA.
Alternative splicing is an important mechanism of transcriptomic and proteomic diversity and is progressively involved in cardiovascular disease (CVD) pathogenesis. Serum response factor (SRF), a critical transcription factor in cardiac development and function, may itself undergo splicing regulation, potentially altering its function in disease states. The objective of this study is to identify SRF-associated alternative splicing events in cardiac pathological conditions and examine regulatory interactions with splicing factors using RNA-seq data.
View Article and Find Full Text PDFNucleic Acids Res
July 2025
Institute of Molecular Biosciences, Goethe University, 60438 Frankfurt am Main, Germany.
Nuclear speckles (NS) and paraspeckles (PS) are adjacent yet distinct nuclear condensates that undergo stress-induced reorganization. Here, we identify a dual role for the splicing factor SRSF5 in coordinating the crosstalk between both condensates. Super-resolution imaging shows that SRSF5, while enriched in NS, also overlaps with the shell of a subset of PS.
View Article and Find Full Text PDFbioRxiv
May 2025
Department of Molecular Microbiology, Washington University School of Medicine, Saint Louis, Missouri, USA.
Selective packaging of a dimeric HIV-1 genome (gRNA) is thought to be driven by specific binding of the nucleocapsid (NC) domain of viral Gag protein to the packaging signal (Ψ) in the host cell cytosol. Through replacement of NC with heterologous RNA-binding domains (RBDs) with distinct RNA-binding properties, we show that the biased adenosine-rich nucleotide content of the gRNA facilitates its selective packaging. Despite disparate RNA binding specificities, all Gag-RBD chimeras successfully recruited the gRNA to the plasma membrane, but many were arrested at the assembly stage.
View Article and Find Full Text PDFLoss of nuclear TDP-43 splicing activity is a common feature across neurodegenerative diseases including amyotrophic lateral sclerosis (ALS) and frontotemporal lobar degeneration (FTLD), but its relevance to Alzheimer's disease (AD) remains unclear. Here, we show that TDP-43 pathology in AD is broadly associated with splicing abnormalities, including aberrant splicing of amyloid precursor protein (APP). TDP-43 drives the formation of elongated APP isoforms, disrupting alternative splicing across ALS, FTLD-TDP and AD, providing a compelling mechanism for a long-standing observation of APP isoform dysregulation.
View Article and Find Full Text PDFFASEB J
July 2025
Department of Obstetrics, Henan Provincial People's Hospital, People's Hospital of Zhengzhou University, Zhengzhou, Henan, China.
The pathogenesis of preeclampsia (PE) is closely related to the dysfunction of placental trophoblast. However, the precise mechanisms underlying placental dysfunction remain inadequately elucidated. The expression of Serine/arginine-rich Splicing Factor 5 (SRSF5) in the placental tissues of PE mice was detected by quantitative real time-PCR (qRT-PCR), western blot and immunohistochemistry (IHC) experiments.
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