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Insertion/deletion (InDel) polymorphisms show promising applications in the field of forensic genetics, such as ancestry inference and complex kinship identification. In the present study, we investigated the genetic polymorphisms and forensic parameters of Chinese Baoan group based on three panels, and explored the genetic connections between the Baoan group and 26 intercontinental reference populations. Based on simulated genotyping data constructed from allele frequencies of 150 loci, the study utilized the likelihood ratio (LR) method and identical by state (IBS) method to assess the system efficacy of different panels and identification of complex kinships with the increase in the number of genetic markers. The results indicated that the 150 loci were highly polymorphic in the Baoan group, and the Baoan group was genetically closer to the reference East Asian populations. The identification efficacy of different kinships based on the 150 loci was greater than that of single panel alone or a combination of any two panels, which suggested that both the increase in the number of genetic markers and the joint analysis of different panels could enhance the system efficacy of kinship identification. The system efficacy for the identifications of different kinships based on the combination of 150 loci were 1 and 0.9900 in parent-child and full-sibling pairs, respectively (LR > 10,000, LR < 0.0001); 0.8595, 0.8790, and 0.8615 in half-sibling, grandparent-grandchild, and uncle-nephew pairs, respectively (LR > 10, LR < 0.1); 0.3170 in first cousin pairs (LR > 10, LR < 0.1).
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http://dx.doi.org/10.1016/j.gene.2025.149666 | DOI Listing |
Sci Rep
September 2025
Department of Animal Science, College of Agriculture and Natural Resources, University of Tehran, Karaj, Iran.
One of the most powerful tools for identifying genomic regions associated with various phenotypes is GWAS. Identifying genes influencing milk production traits in Iranian Holstein dairy cows is crucial to understanding the genetic mechanisms underlying these traits and improving future milk production. Therefore, using a single-step GWAS, this study aimed to identify genomic regions, genes, and pathways associated with milk yield (MY), milk fat percentage (FP), milk protein percentage (PP), and somatic cell count (SCC) traits in the Iranian Holstein cattle population.
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August 2025
The Roslin Institute, University of Edinburgh, Easter Bush Campus, Midlothian, UK.
Males and females exhibit differences in proteome profiles associated with disease risk. However, sex-dimorphic protein quantitative trait loci (SD-pQTL) and their effects on sex differences in health disorders have not been thoroughly investigated. We conducted a sex-stratified, genome-wide association study on 2,922 proteins using data from 30,272 individuals of Caucasian ancestry from the UK Biobank and compared the estimated effects on protein levels of these variants in the men and women to identify SD-pQTLs.
View Article and Find Full Text PDFMol Phylogenet Evol
August 2025
Department of Biochemistry, Genetics and Microbiology, Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Pretoria, South Africa. Electronic address:
The nitrogen-fixing and nodule-forming symbionts of legumes, which belong to the class Betaproteobacteria, are informally known as beta-rhizobia. Thus far, members of this group have only been found in the genera Paraburkholderia, Trinickia and Cupriavidus. In this study, we investigate the poorly characterized evolutionary history of this trait in the predominant beta-rhizobial genus, Paraburkholderia.
View Article and Find Full Text PDFG3 (Bethesda)
August 2025
Center for Autoimmune Genomics and Etiology, Cincinnati Children's Hospital Medical Center, Cincinnati, Ohio 45229, USA.
Multiple Sclerosis (MS) is an immune-mediated demyelinating disease of the central nervous system (CNS) with a complex etiology involving environmental and genetic factors. Numerous genetic risk loci for MS have been nominated through genome-wide association studies, with most associated variants residing in non-coding regions. However, further work is needed to understand how genetic variation contributes to disease-related alterations to gene expression.
View Article and Find Full Text PDFPlant J
August 2025
Department of Plant Soil and Microbial Sciences, Molecular Plant Science, Michigan State University, 1066 Bogue Street Room 2210, East Lansing, Michigan, 48824, USA.
Solanum verrucosum Schlechtendal (2x = 2n = 24) is unique among the clade 4 Solanum Sect Petota species. In addition to being one of the only fully self-compatible diploid potato species, S. verrucosum is the only clade 4 species that lacks prezygotic interspecific reproductive barriers.
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