Machine-learning-assisted nanopore sensing solution for the determination of matrix metalloproteinase.

Biosens Bioelectron

School of Life Science and Technology, Xidian University, Xi'an, Shaanxi, 710126, China; Engineering Research Center of Molecular & Neuroimaging, Ministry of Education, Xidian University, Xi'an, Shaanxi, 710126, China. Electronic address:

Published: November 2025


Category Ranking

98%

Total Visits

921

Avg Visit Duration

2 minutes

Citations

20

Article Abstract

Diabetic kidney disease (DKD) is a serious complication of diabetes patients with long time duration, presenting with albuminuria and/or a reduced estimated glomerular filtration rate (eGFR), and without symptoms of other primary causes of kidney injury. Clinical studies showed matrix metalloproteinase 2 (MMP2) is the potential indicator for DKD diagnosis. However, the typical measurement of MMP2 is complicated and time-consuming. Therefore, it is necessary to develop an easy and reliable approach for MMP2 detection. Herein, we proposed a reliable and easy-to-use nanopore solution for the quantitative measurement of MMP2 at the single-molecule level using α-hemolysin nanopore. Assisted by machine learning, the peptide substrate and peptide products digested by MMP2 were classified with 100 % accuracy. The quantitative range of MMP2 concentration was 50-400 ng/ml. We further investigated the inhibitory effects of MMP2 activity by different chemicals including Cu, Ni, Zn, EDTA, and its inhibitor GM6001. Finally, MMP2 measurement was explored in the presence of simulated urine. Our research provides a new solution of quantification of MMP2 activity combined with machine learning for DKD diagnosis.

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.bios.2025.117752DOI Listing

Publication Analysis

Top Keywords

mmp2
9
matrix metalloproteinase
8
dkd diagnosis
8
measurement mmp2
8
machine learning
8
mmp2 activity
8
machine-learning-assisted nanopore
4
nanopore sensing
4
sensing solution
4
solution determination
4

Similar Publications

Background: Sodium benzoate, a common food additive, has raised safety concerns despite its general recognition as safe. This study aimed to investigate the mechanisms of sodium benzoate-induced nephrotoxicity.

Method: A network toxicology approach was used to identify key targets and core pathways involved in sodium benzoate nephrotoxicity.

View Article and Find Full Text PDF

The Relationship Between Pulpal Diagnostic Conditions and Potential Inflammatory Biomarkers.

Int Endod J

September 2025

Department of Endodontics, Advanced Educational Program in Endodontics, Health Information and Business Systems (HIBS), School of Dentistry, UAB|the University of Alabama at Birmingham, Birmingham, Alabama, USA.

Introduction: Accurate diagnosis of pulpal health is crucial to identify the most effective therapeutic approach. However, differentiating pulpal conditions, which may require different treatment approaches, remains a challenge. This study aimed to address this gap by investigating the protein levels of 17 inflammatory biomarkers simultaneously in the dental pulp with different clinical diagnoses.

View Article and Find Full Text PDF

Purpose: Calumenin (CALU) is a calcium-binding protein involved in several physiological processes, exhibiting tumor-specific expression variation and emerging as a potential player in cancer progression. This study aimed to investigate the correlation between CALU and clinicopathological features in breast cancer (BC) and perform a functional assessment of CALU based on a microRNA-mediated knockdown approach.

Methods: The BC tissues' CALU expression was measured by q-RT-PCR.

View Article and Find Full Text PDF

Peptide Sequence Modulating the Analytical Performance of Electrogenerated Chemiluminescence Peptide-Based Biosensors for Matrix Metalloproteinase 2.

Anal Chem

September 2025

Key Laboratory of Analytical Chemistry for Life Science of Shaanxi Province, School of Chemistry and Chemical Engineering, Shaanxi Normal University, Xi'an 710062, P. R. China.

Electrogenerated chemiluminescence (ECL) methods have been widely used in clinical diagnosis. Although ECL peptide-based biosensors continue to grow with good sensitivity and signal flexibility, little emphasis has been placed on the effect of the peptide sequence on ECL sensitivity. We herein studied the nuanced effects of different peptide sequences on the analytical performance of ECL peptide-based biosensors for matrix metalloproteinase 2 (MMP-2) assay, in which [(pbz)Ir(DMSO)Cl] (pbz = 3-(2-pyridyl)benzoic acid) was used as the ECL emitter while a specific peptide was used as the molecular recognition element.

View Article and Find Full Text PDF

Study Question: What is the effect of hCG on the epigenetic profile and the expression of other molecular factors in endometrial stromal cells (ESCs)?

Summary Answer: Our findings suggest that hCG treatment alters the molecular environment of decidualized ESCs, potentially influencing implantation and immune regulation through epigenetic modifications and changes in the levels of secreted proteins and micro-ribonucleic acids (miRNAs).

What Is Known Already: Embryo implantation depends not only on the quality of the embryo but also on the receptivity of the endometrium, the specialized lining of the uterus that undergoes dynamic changes to support pregnancy. Effective communication between the maternal and fetal compartments, facilitated by molecular signals and cellular interactions, is essential for successful implantation.

View Article and Find Full Text PDF