98%
921
2 minutes
20
Motivated by applications in medical bioinformatics, Khayatian et al. (2024) introduced a family of metrics on Cayley trees [the -Robinson-Foulds (RF) distance, for . . . ] and explored their distribution on pairs of random Cayley trees via simulations. In this article, we investigate this distribution mathematically and derive exact asymptotic descriptions of the distribution of the -RF metric for the extreme values and , as becomes large. We show that a linear transform of the 0-RF metric converges to a Poisson distribution (with mean 2), whereas a similar transform for the ()-RF metric leads to a normal distribution (with mean ). These results (together with the case which behaves quite differently and ) shed light on the earlier simulation results and the predictions made concerning them.
Download full-text PDF |
Source |
---|---|
http://dx.doi.org/10.1089/cmb.2025.0093 | DOI Listing |
J Comput Biol
July 2025
Biomathematics Research Centre, University of Canterbury, Christchurch, New Zealand.
Motivated by applications in medical bioinformatics, Khayatian et al. (2024) introduced a family of metrics on Cayley trees [the -Robinson-Foulds (RF) distance, for . .
View Article and Find Full Text PDFPLoS One
November 2023
Department of Basic Sciences and Humanities, College of Electrical and Mechanical Engineering, National University of Sciences and Technology (NUST), Rawalpindi, Pakistan.
In graph theory, a topological index is a numerical value that is in good correlation with certain physical properties of a molecule. It serves as an indicator of how a chemical structure behaves. The Shannon's entropy describes a comparable loss of data in information transmission networks.
View Article and Find Full Text PDFBiosystems
November 2023
Faculty of Kinesiology, University of Zagreb, Horvaćanski zavoj 15, HR-10000 Zagreb, Croatia.
Phylogenetics is the study of ancestral relationships among biological species. Such sequence analyses are often represented as phylogenetic trees. The branching pattern of each tree and its topology reflect the evolutionary relatedness between analyzed sequences.
View Article and Find Full Text PDFPhys Rev E
February 2023
Department of Physics and Astronomy, University of Notre Dame, 225 Nieuwland Science Hall, Notre Dame, Indiana 46556, USA.
The linked cluster expansion has been shown to be highly efficient in calculating equilibrium and nonequilibrium properties of a variety of 1D and 2D classical and quantum lattice models. In this article, we extend the linked cluster method to the Cayley tree and its boundaryless cousin the Bethe lattice. We aim to (a) develop the linked cluster expansion for these lattices, a novel application, and (b) to further understand the surprising convergence efficiency of the linked cluster method, as well as its limitations.
View Article and Find Full Text PDFPhys Rev E
March 2022
Departmento de Física, Universidade Federal do Rio Grande do Norte, Natal-RN, 59078-970, Brazil.
There are few exactly solvable lattice models and even fewer solvable quantum lattice models. Here we address the problem of finding the spectrum of the tight-binding model (equivalently, the spectrum of the adjacency matrix) on Cayley trees. Recent approaches to the problem have relied on the similarity between the Cayley tree and the Bethe lattice.
View Article and Find Full Text PDF