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The ability of eukaryotic cells to orchestrate mechanical interactions from the subcellular to the organismal levels is mediated by their cytoskeleton. One of the key components of the eukaryotic cytoskeleton is actin, a highly conserved building block of the actin filaments, which interact with many other proteins and underlie diverse cell structures, necessary for organizing intracellular transport, phagocytosis and cell movement. Many organisms have evolved multiple actin variants, which share similar amino acid sequences but differ more dramatically at the gene level, including the presence and number of introns. In the current study, we show that the intron-containing and intronless actin genes are present in the poriferan and that the encoded actins can perform different functions. These actins differ in the gene expression profiles, post-translational modifications, cellular, and subcellular localizations. The intronless actin genes of , , are products of recent duplications, exhibit low divergence between paralogs, and serve as the primary cytoskeletal actins. The divergent intron-containing actin gene, , is differentially expressed in a specific cell lineage and its expression is dependent on the state of cell aggregation, which indicates its unique functions in the morphogenetic processes of the sponge.
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http://dx.doi.org/10.1093/nargab/lqaf071 | DOI Listing |
NAR Genom Bioinform
June 2025
N.K. Koltsov Institute of Developmental Biology, Russian Academy of Sciences, 119334 Moscow, Russia.
The ability of eukaryotic cells to orchestrate mechanical interactions from the subcellular to the organismal levels is mediated by their cytoskeleton. One of the key components of the eukaryotic cytoskeleton is actin, a highly conserved building block of the actin filaments, which interact with many other proteins and underlie diverse cell structures, necessary for organizing intracellular transport, phagocytosis and cell movement. Many organisms have evolved multiple actin variants, which share similar amino acid sequences but differ more dramatically at the gene level, including the presence and number of introns.
View Article and Find Full Text PDFFront Genet
October 2024
Pear Research Institute, National Institute of Horticultural and Herbal Science, Rural Development Administration, Naju, Republic of Korea.
Pears constitute an essential temperate crop and are primarily produced through interspecific hybridization owing to self-incompatibility that complicates their breeding history. To address this, we sequenced the complete chloroplast (cp) genomes of 18 and one s species using the Illumina HiSeq4000 platform. The cp genomes ranged from 159,885 bp to 160,153 bp and exhibited a conserved circular DNA structure with an average GC content of 36.
View Article and Find Full Text PDFDev Comp Immunol
March 2023
Department of Agricultural and Environmental Sciences, College of Agriculture, Tennessee State University, 3500 John A. Merritt Boulevard, Nashville, TN, USA. Electronic address:
Cross-species comparison of vertebrate genomes has unraveled previously unknown complexities of interferon (IFN) systems in amphibian species. Recent genomic curation revealed that amphibian species have evolved expanded repertoires of four types of intron-containing IFN genes akin to those seen in jawed fish, intronless type I IFNs and intron-containing type III IFNs akin to those seen in amniotes, as well as uniquely intronless type III IFNs. This appears to be the case with at least ten analyzed amphibian species; with distinct species encoding diverse repertoires of these respective IFN gene subsets.
View Article and Find Full Text PDFPlants (Basel)
December 2022
Anhui Provincial Key Laboratory of the Conservation and Exploitation of Biological Resources, College of Life Sciences, Anhui Normal University, Wuhu 241000, China.
As representative of the early-divergent groups of angiosperms, Saxifragales is extremely divergent in morphology, comprising 15 families. Within this order, our previous case studies observed significant structural diversities among the plastomes of several lineages, suggesting a possible role in elucidating their deep phylogenetic relationships. Here, we collected 208 available plastomes from 11 constituent families to explore the evolutionary patterns among Saxifragales.
View Article and Find Full Text PDFInt J Mol Sci
October 2022
Department of Materials Science and Biotechnology, Graduate School of Science and Engineering, Ehime University, Matsuyama 790-8577, Ehime, Japan.
Eukaryotic precursor tRNAs (pre-tRNAs) often have an intron between positions 37 and 38 of the anticodon loop. However, atypical introns are found in some eukaryotes and archaea. In an early-diverged red alga , the tRNA(UAU) gene contains three intron coding regions, located in the D-, anticodon, and T-arms.
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