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Objective: This study aimed to validate an osteoarthritis (OA) phenotyping algorithm within the Million Veteran Program (MVP) using the United States (US) Department of Veterans Affairs (VA) Centralized Interactive Phenomics Resource (CIPHER).
Methods: A random sample of 213 veterans was analyzed sing ICD-9-CM/ICD-10-CM codes from a previously published algorithm (PMID:29559693). OA cases required two OA codes at least 30 days apart, while controls were excluded based on codes for conditions more common in OA patients, such as chondrocalcinosis and crystal arthropathies. Manual chart reviews identified documented OA mentions and joint replacements. Cohen's kappa statistic assessed agreement. Discrepancies between chart data and coding were re-evaluated through re-abstraction.
Results: Among 213 veterans, 174 (82%) had chart-documented OA. Agreement between chart review and code-based general OA identification was moderate (kappa = 0.47). Joint-specific agreement was substantial for knee (kappa = 0.63) and hip OA (kappa = 0.59), but lower for spine (kappa = 0.16) and hand (kappa = 0.34). Agreement was high for hip (kappa = 0.86) and knee replacements (kappa = 0.69). The McNemar test showed significant asymmetry for general OA, hand OA, and thumb OA, indicating discrepancies between chart and coded data. No significant asymmetry was found for knee and hip OA, supporting better alignment.
Conclusions: This study supports the validity of the OA phenotyping algorithm using the VA database for identifying OA. The variability in identifying milder cases highlights the need for refined phenotyping algorithms and standardized diagnostic protocols to improve OA detection and personalized care for veterans.
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http://dx.doi.org/10.1101/2025.05.12.25327449 | DOI Listing |
PLoS Comput Biol
September 2025
OmnibusXLab, OmnibusX Company Limited, Ho Chi Minh City, Vietnam.
OmnibusX is an integrated, privacy-centric platform that enables code-free multi-omics data analysis by bridging computational methodologies with user-friendly interfaces. Designed to overcome challenges posed by fragmented analytical tools and high computational barriers, OmnibusX consolidates workflows for diverse technologies - including bulk RNA-seq, single-cell RNA-seq, single-cell ATAC-seq, and spatial transcriptomics - into a single, cohesive application. The application integrates established open-source tools such as Scanpy, DESeq2, SciPy, and scikit-learn into transparent, reproducible pipelines, offering users control over analytical parameters.
View Article and Find Full Text PDFAdv Sci (Weinh)
September 2025
Department of Biomedical Engineering, University of Virginia, Charlottesville, VA, 22908, USA.
Focused Ultrasound (FUS) is the concentration of acoustic energy into a small region to produce therapeutic bioeffects. FUS-induced blood-brain barrier opening (BBBO), a strategy to deliver drugs and genes to the brain, also enhances glymphatic drainage, the brain-specific waste clearance system. Thus, FUS BBBO is a promising strategy for addressing the accumulation of neurotoxic solutes that are characteristic of many neurodegenerative diseases.
View Article and Find Full Text PDFFront Psychol
August 2025
Department of Physical Education, Korea National University of Education, Cheongju, Republic of Korea.
Introduction: This qualitative study investigates psychosocial and structural barriers to dual careers faced by Korean student-athletes. In South Korea, coexistence of the elite-centered sports culture and exam-driven education system poses significant challenges for student-athletes seeking to balance their academic and athletic goals.
Methods: This study is grounded in Bronfenbrenner's ecological systems theory and explores interactions across five ecological levels: microsystem (parents and coaches), mesosystem (school-sport relationships), exosystem (institutional structures), macrosystem (sociocultural norms), and chronosystem (policy timing).
Diagnostics (Basel)
August 2025
Department of Emergency Medicine, Soroka University Medical Center, Beer Sheva 84101, Israel.
: Armed conflicts impose complex logistical and behavioral challenges on healthcare systems, particularly in managing acute conditions such as ST-elevation myocardial infarction (STEMI) and ischemic stroke. Although both diagnoses require timely intervention, their clinical pathways differ significantly. Few studies have systematically compared their management during active warfare, particularly within the warzone.
View Article and Find Full Text PDFSupport Care Cancer
August 2025
Luddy School of Informatics, Computing, and Engineering, Indiana University Indianapolis, Indianapolis, IN, USA.
Purpose: Symptom tracking systems are essential for identifying symptoms in patients, prompting timely clinical intervention to reduce suffering and improve outcomes for children with cancer. Electronic patient-reported outcome tools have been designed to assess the presence and severity of symptoms and notify clinicians of the patient's condition, facilitating quick and effective symptom management. Utilizing co-design methods allows end user input in the tool development process.
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