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Rationale And Objectives: Hyperpolarized Xe magnetic resonance imaging (MRI) provides a way to quantify ventilation heterogeneity as ventilation defect percent (VDP), calculated as the volume of unventilated lung volume normalized to the thoracic cavity volume. Currently used methods for quantifying VDP include (1) binary signal-intensity thresholds (Binary-threshold, BT), (2) Gaussian transformation of signal-intensity histogram with standard deviation thresholds or Gaussian-linear-binning (GLB), and (3) iterative centroid-based clustering of the signal-intensity histogram (k-means). These methods have not been directly compared in patients with asthma and chronic obstructive pulmonary disease (COPD), in whom ventilation defects are hallmark findings. Our objective was to quantify and compare VDP using these four different methods.
Patients And Methods: Data from 175 participants (n=42 healthy, n=43 COPD, n=90 asthma) were retrospectively evaluated using a CNN co-registration and segmentation pipeline and GLB, GLB, (slice-wise evaluation of GLB) BT and k-means VDP quantification methods. Linear-regression and Bland-Altman plots were used to quantify inter-method correlations and agreement.
Results: VDP was significantly different using GLB (Asthma: 6±9%, COPD: 7±7%, p<.001) and BT (Asthma: 6±7%, COPD: 10±8%, p<.001) methods compared to GLB (Asthma: 12±13%, COPD: 16±15%, p<.001) and k-means (Asthma: 12±12%, COPD: 25±17%, p<.001). VDP calculated using GLB (R=.64, p<.001), GLB (R=.84, p<.001) and BT (R=.84, p<.001) was significantly correlated with k-means VDP. Bland-Altman plots revealed wide 95% confidence intervals of agreement for k-means with GLB/GLB (COPD -6%/-1%: 42%/23%; asthma -5%/-10%:16%/10%) and BT (COPD -4%:36%; asthma -6%:19%).
Conclusion: VDP differences in patients with asthma and COPD calculated using four methods are important to consider for multi-center studies.
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http://dx.doi.org/10.1016/j.acra.2025.04.030 | DOI Listing |
Sci Rep
September 2025
Electrical and Electronics Engineering Department, Mugla Sitki Kocman University, 48000, Kotekli, Turkey.
This study aims to highlight the effectiveness of computer vision (CV) techniques in classifying brain tumors using a comprehensive dataset consisting of computed tomography (CT) scans. The proposed framework comprises six types of brain tumors, including benign tumors (Meningioma, Schwannoma, and Neurofibromatosis) and malignant tumors (Glioma, Chondrosarcoma, and Chordoma). The acquired images underwent pre-processing steps to enhance the dataset's quality, including noise reduction through median and Gaussian filters and region of interest (ROIs) extraction using an automated binary threshold-based fuzzy c-means segmentation (ABTFCS) approach.
View Article and Find Full Text PDFAcad Radiol
August 2025
Robarts Research Institute, Western University, London, Canada (E.D., C.Y., A.M., A.M.M., G.P.); School of Biomedical Engineering, Western University, London, Canada (E.D., A.M., G.P.); Department of Medical Biophysics, Western University, London, Canada (G.P.). Electronic address:
Rationale And Objectives: Hyperpolarized Xe magnetic resonance imaging (MRI) provides a way to quantify ventilation heterogeneity as ventilation defect percent (VDP), calculated as the volume of unventilated lung volume normalized to the thoracic cavity volume. Currently used methods for quantifying VDP include (1) binary signal-intensity thresholds (Binary-threshold, BT), (2) Gaussian transformation of signal-intensity histogram with standard deviation thresholds or Gaussian-linear-binning (GLB), and (3) iterative centroid-based clustering of the signal-intensity histogram (k-means). These methods have not been directly compared in patients with asthma and chronic obstructive pulmonary disease (COPD), in whom ventilation defects are hallmark findings.
View Article and Find Full Text PDFAnesth Analg
February 2025
Departments of Anesthesia and Neurosurgery, University of Iowa, Iowa City, Iowa.
Background: Human studies of awakening from general anesthesia inform understanding of neural mechanisms underlying recovery of consciousness. Probability distributions of times for emergence from anesthesia provide mechanistic information on whether putative biological models are generalizable. Previously reported distributions involved nonhomogenous groups, unsuitable for scientific comparisons.
View Article and Find Full Text PDFExp Brain Res
October 2021
Department of Health and Human Physiology, Motor Control Laboratories, University of Iowa, Iowa City, IA, 52242, USA.
The purpose of this study was to determine the form of the relation between the mean amplitude and variance of motor-evoked potentials (MEP). To this end, single-pulse transcranial magnetic stimulation (TMS) was applied over the motor cortex of seventeen neurologically normal adult human subjects. The coil was positioned at a locus on the scalp that elicited an MEP in the first dorsal interosseous (FDI) at the lowest stimulus intensity.
View Article and Find Full Text PDFIEEE Trans Med Imaging
April 2019
One of the most important and error-prone tasks in biological image analysis is the segmentation of touching or overlapping cells. Particularly for optical microscopy, including transmitted light and confocal fluorescence microscopy, there is often no consistent discriminative information to separate cells that touch or overlap. It is desired to partition touching foreground pixels into cells using the binary threshold image information only, and optionally incorporating gradient information.
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