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Expected changes in climate warrant research on selection for a phenotypically stable cattle population that can perform consistently across diverse environmental conditions. In this study, we utilize a heteroscedastic random regression model to 1) characterize the additive genetic and other phenotypic components of dry matter intake (DMI) and respiration rate (RR) concerning the temperature humidity index (THI), 2) assess the presence of genotype-by-environment interactions (G × E) by determining whether the additive genetic reaction norm changes along the observed THI range and by evaluating the additive genetic correlations between DMI or RR at different THI values, and 3) evaluate model-derived accuracy of estimated breeding values (EBV) along a range of THI. Data consisted of repeated observations of DMI and RR on 788 and 569 steers, respectively, over a period of 70 d. A hierarchical model with subject-specific additive genetic and permanent environment effects was fitted to each trait using Bayesian inference. Estimated population slopes, expressed as posterior median and 95% highest posterior density (HPD) interval, were -0.046 (-0.053, -0.039) kg DMI per unit increase in THI per day and 0.027 (0.026, 0.029) breaths per 30s (BP30S) RR for each unit increase in THI on the logarithmic scale, thereby suggesting environmental sensitivity for both traits. Estimated correlations between the additive genetic intercept and slope were -0.78 (-0.86, -0.69) and -0.66 (-1.0, -0.20) for DMI and RR, respectively, indicating that selection for increased DMI and decreased RR at the onset of heat stress can be expected to associate positively with mean population environmental sensitivity to THI. Heritability estimates for DMI at the onset of heat stress (i.e., THI of 70) ranged from 0.30 (0.17, 0.44) to 0.37 (0.20, 0.48) across cohorts but decreased as THI increased. Heritability estimates for RR were low, with 95% HPD upper boundaries ranging from 0.03 to 0.08 across the range of THI evaluated. For DMI, the median additive genetic correlation between 70 and 85 THI and the Spearman correlations between EBV at 70 and 85 THI levels were 0.42 (0.26, 0.57) and 0.39 (0.26, 0.52), respectively, indicating substantial G × E. The median DMI EBV model-derived accuracy at a specific THI value increased from 70 THI to 0.65 at 82 THI, at which point it stabilized. This was likely because more data points were gathered at greater THI.
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http://dx.doi.org/10.1093/jas/skaf115 | DOI Listing |
Psychopharmacology (Berl)
September 2025
Institute of Cardiovascular Research, Sleep Medical Center, Department of Psychiatry, Fundamental and Clinical Research on Mental Disorders Key Laboratory of Luzhou, Affiliated Hospital, Southwest Medical University, Luzhou, Sichuan Province, 646000, China.
Rationale: Genome-wide association studies (GWASs) are used to identify genetic variants for association with schizophrenia (SCZ) risk; however, each GWAS can only reveal a small fraction of this association.
Objectives: This study systematically analyzed multiple GWAS data sets to identify gene subnetwork and pathways associated with SCZ.
Methods: We identified gene subnetwork using dmGWAS program by combining SCZ GWASs and a human interaction network, performed gene-set analysis to test the association of gene subnetwork with clinical symptom scores and disease state, meanwhile, conducted spatiotemporal and tissue-specific expression patterns and cell-type-specific analysis of genes in the subnetwork.
HLA
September 2025
Aix Marseille Univ, CNRS, EFS, ADES, Marseille, France.
Abnormal expression of HLA class Ib, MICA and MICB molecules is associated with the evolution of pathological conditions and clinical settings. Here, we use RNA-sequencing data from two publicly-available projects, from different human organs and tissues and at single-cell level, to present their transcriptional expression throughout the human body, in comparison to that of HLA class Ia, HLA class II, their costimulatory molecules, and the main HLA transcription factors. Our analyses for 21 target genes reveal that median gene expression differs by orders of magnitude and that the classical/non-classical HLA distinction is not absolute for overall expression.
View Article and Find Full Text PDFMicrobiol Spectr
September 2025
Medical Laboratory Department, College of Health and Medical Technology, Sulaimani Polytechnic University, Sulaymaniyah, Iraq.
Unlabelled: The environmental pollution from the misuse of antimicrobial drugs is fueling selection pressure in bacteria, thereby exacerbating the threat to global health. In Iraq, the situation is made worse by the poor implementation of the World Health Organization's Global Antimicrobial Resistance and Use Surveillance System (WHO-GLASS). Consequently, this study aimed to increase surveillance of the spread of antimicrobial resistance in Sulaymaniyah, Iraq.
View Article and Find Full Text PDFCancer Invest
September 2025
Department of Pulmonary and Critical Care Medicine, The First Affiliated Hospital of Soochow University, Suzhou, Jiangsu Province, China.
Given the limited diagnostic technologies and treatment options available for lung adenocarcinoma (LUAD) patients with liver metastases, it is crucial to identify potential genomic signatures associated with liver metastasis, which could significantly contribute to the development of improved diagnostic tools and treatment strategies for LUAD patients with liver metastases. In this study, we identified specific genetic alterations in tumor samples with liver metastases by targeted capture sequencing. The results showed that the significantly higher mutation frequencies of , and in LUAD patients with liver metastases and and mutations found in both tumor tissues and plasma samples from patients with liver metastases.
View Article and Find Full Text PDFUrologia
September 2025
UROGIV Research Group, School of Medicine, Universidad Del Valle, Cali, Colombia.
Background And Objective: Bladder cancer (BC) is the sixth most common cancer in the U.S., with risk factors such as smoking, older age, and male sex.
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