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Data driven machine learning (ML) based methods have the potential to significantly reduce the computational as well as experimental cost for the rapid and high-throughput screening of catalyst materials using binding energy as a descriptor. In this study, a set of eight widely used ML models classified as linear, kernel and tree-based ensemble models were evaluated to predict the binding energy of catalytic descriptors (CO* and OH*) on (111)-terminated CuM alloy surfaces using the readily available metal properties in the periodic table as features. Among all the models tested, the extreme gradient boosting regressor (xGBR) model showed the best performance with the root mean square errors (RMSEs) of 0.091 eV and 0.196 eV for CO and OH binding energy predictions on (111)-terminated AB alloy surfaces. Moreover, the xGBR model gave the highest scores of 0.970 and 0.890 for CO and OH binding energies. The time taken by the ML predictions for 25 000 fits for each model was varied between 5 and 60 min on a 6 core and 8 GB RAM laptop, which was very negligible as compared to DFT calculations. Our ML model showed remarkable performance for accurately predicting the CO and OH binding energies on a (111)-terminated CuM alloy with a mean absolute error (MAE) of 0.02 to 0.03 eV compared to DFT calculated values. The ML predicted binding energies can be further used with an microkinetic model (MKM) to efficiently screen AB-type bimetallic alloys for the formic acid decomposition reaction.
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http://dx.doi.org/10.1039/d4cp04887c | DOI Listing |
PLoS One
September 2025
Computational Chemistry Laboratory, Chemistry Department, Faculty of Science, Minia University, Minia, Egypt.
Polar protic and aprotic solvents can effectively simulate the maturation of breast carcinoma cells. Herein, the influence of polar protic solvents (water and ethanol) and aprotic solvents (acetone and DMSO) on the properties of 3-(dimethylaminomethyl)-5-nitroindole (DAMNI) was investigated using density functional theory (DFT) computations. Thermodynamic parameters retrieved from the vibrational analysis indicated that the DAMNI's entropy, heat capacity, and enthalpy increased with rising temperature.
View Article and Find Full Text PDFMol Divers
September 2025
Department of Pharmacognosy, College of Pharmacy, Prince Sattam Bin Abdulaziz University, 11942, Al Kharj, Saudi Arabia.
Cyclin-dependent kinase 20 (CDK20), also known as cell cycle-related kinase (CCRK), plays a pivotal role in hepatocellular carcinoma (HCC) progression by regulating β-catenin signaling and promoting uncontrolled proliferation. Despite its emerging significance, selective small-molecule inhibitors of CDK20 remain unexplored. In this study, a known CDK20 inhibitor, ISM042-2-048, was employed as a reference to retrieve structurally similar compounds from the PubChem database using an 85% similarity threshold.
View Article and Find Full Text PDFMol Divers
September 2025
State Key Laboratory Basis of Xinjiang Indigenous Medicinal Plants Resource Utilization, Xinjiang Technical Institute of Physics and Chemistry, Chinese Academy of Sciences, Urumqi, 830011, Xinjiang, China.
Aurora kinases are a group of serine/threonine kinases essential for cell mitosis, comprising Aurora A, B, and C. However, the Aurora B is overexpressed in multiple tumors and the aurone has been proved to exhibit potent inhibitory activity against Aurora B kinase by our group. The indolinone was considered as an aurone scaffold hopping analog, and the indolinone-based Aurora B inhibitor library (3577 molecules) was constructed by FBDD strategy.
View Article and Find Full Text PDFJ Agric Food Chem
September 2025
School of Science, Asymmetric Synthesis and Chirotechnology Key Laboratory of Sichuan Province, Xihua University, Chengdu 610039, P. R. China.
The emergence of severe resistance issues in plant pathogenic fungi poses a significant threat to the global quality and safety of crops. In this study, 36 novel derivatives featuring a 5,6,7,8-tetrahydroquinazolin structure were designed and synthesized for the first time. These 36 target compounds were subjected to tests against five fungal species.
View Article and Find Full Text PDFPhytopathology
September 2025
Guizhou University, Key Laboratory of Green Pesticide and Agricultural Bioengineering, Ministry of Education, Huaxi District, Guiyang, Guizhou Province of China, Guiyang, China, 550025;
Osthole exhibits strong inhibitory activity against phytopathogenic fungi; however, its antifungal mechanism remains unclear. This study assessed osthole's inhibitory effects on several phytopathogenic fungi, revealing a half-maximal effective concentration of 70.03 μg/ml against the hyphal growth of .
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