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Hi-C can obtain three-dimensional chromatin structure information and is widely used for genome assembly. We constructed the GutHi-C technology. As shown in the graphical abstract, it is a highly efficient and quick-to-operate method and can be widely used for human, livestock, and poultry gut microorganisms. It provides a reference for the Hi-C methodology of the microbial metagenome. DPBS, Dulbecco's phosphate-buffered saline; Hi-C, high-through chromatin conformation capture; LB, Luria-Bertani; NGS, next-generation sequencing; PCR, polymerase chain reaction; QC, quality control.
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http://dx.doi.org/10.1002/imt2.227 | DOI Listing |
Hosp Pediatr
September 2025
Children's Hospital of Philadelphia, Philadelphia, Pennsylvania.
Background: Direct admission can help reduce emergency department crowding, improve patient satisfaction, and decrease costs, yet there is opportunity to improve standardized processes to do so safely and efficiently. We designed and implemented a new process for urgent direct admission (UDA) at our children's hospital with the SMART (specific, measurable, achievable, relevant, time-bound) aim to increase the number of UDAs between transfer to an intensive care unit (ICU) within 12 hours from direct admission by 50% in 12 months.
Methods: We compared unanticipated ICU transfers within 12 hours of admission (outcome) before and after implementing a standardized UDA process.
PLoS One
September 2025
Artificial Intelligence Research and Innovation Lab - AIRIL, Dhaka, Bangladesh.
Due to limited literacy among root-level farmers, hydroponic farming in Bangladesh faces significant challenges. Therefore, there is a demand for easy-to-use technical systems to help farmers to monitor and operate smart systems. To address the issue, this study introduces a robust hydroponic system that provides automatic guidelines, monitoring, and a disease detection system.
View Article and Find Full Text PDFBiol Cell
September 2025
IGBMC, Université de Strasbourg, CNRS UMR 7104, Inserm UMR-S 1258, Illkirch, France.
Deep learning methods using convolutional neural networks are very effective for automatic image segmentation tasks with no exception for cellular electron micrographs. However, the lack of dedicated easy-to-use tools largely reduces the widespread use of these techniques. Here we present DeepSCEM, a straightforward tool for fast and efficient segmentation of cellular electron microscopy images using deep learning with a special focus on efficient and user-friendly generation and training of models for organelle segmentation.
View Article and Find Full Text PDFInt J Ophthalmol
September 2025
Department of Ophthalmology, Faculty of Medicine, Public Health and Nursing, Universitas Gadjah Mada, Jl. Farmako, Sekip Utara, Yogyakarta 55248, Indonesia.
Aim: To measure abducens nerve palsy patients' visual angle using real time video-based gaze tracking system.
Methods: This research was a cross-sectional study. The subjects were taken by convenience sampling technique in the Neuro-ophthalmology department at Sardjito General Hospital Yogyakarta, Indonesia, and had met the inclusion and exclusion criteria.
BMC Bioinformatics
August 2025
Department of Anatomy and Structural Biology, University of Yamanashi, Yamanashi, Japan.
With the development of sequencing technologies, chromosome-level genome assemblies have become increasingly common across various organisms, including non-model species. BLAST + is one of the most widely used bioinformatics tools for computing sequence alignments, offering numerous optimizations for speed and scalability. Dot plots, which visualize the similarity between two sequences, are widely used in biological research.
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