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Purpose: To develop and validate a clinicoradiomics model based on intratumoral habitat imaging for preoperatively predicting of progression-free survival (PFS) of clear cell renal cell carcinoma (ccRCC) and analyzing progression-associated genes expression.
Methods: This retrospective study included 691 ccRCC patients from multicenter databases. Entire tumor segmentation was performed with handcrafted process to generate habitat subregions based on a pixel-wise gray-level co-occurrence matrix analysis. Cox regression models for PFS prediction were constructed using conventional volumetric radiomics features (Radiomics), habitat subregions-derived radiomics (Rad-Habitat), and an integration of habitat radiomics and clinical characteristics (Hybrid Cox). Training (n = 393) and internal validation (n = 118) was performed in a Nanjing cohort, external validation was performed in a Wuhan and Zhejiang cohort (n = 227) and in a TCGA-KIRC (n =71) with imaging-genomic correlation. Statistical analysis included the area-under-ROC curve analysis, C-index, decision curve analysis (DCA) and Kaplan-Meier survival analysis.
Results: Hybrid Cox model resulted in a C-index of 0.83 (95% CI, 0.73-0.93) in internal validation and 0.79 (95% CI, 0.74-0.84) in external validation for PFS prediction, higher than Radiomics and Rad-Habitat model. Patients stratified by Hybrid Cox model presented with significant difference survivals between high-risk and low-risk group in 3 data sets (all P < 0.001 at Log-rank test). TCGA-KIRC data analysis revealed 37 upregulated and 81 downregulated genes associated with habitat imaging features of ccRCC. Differentially expressed genes likely play critical roles in protein and mineral metabolism, immune defense, and cellular polarity maintenance.
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http://dx.doi.org/10.1016/j.urolonc.2024.09.025 | DOI Listing |
J Neurooncol
September 2025
Department of Radiology, The Affiliated Hospital of Qingdao University, Qingdao, 266003, Shandong, China.
Rationale And Objectives: Double expression lymphoma (DEL) is an independent high-risk prognostic factor for primary CNS lymphoma (PCNSL), and its diagnosis currently relies on invasive methods. This study first integrates radiomics and habitat radiomics features to enhance preoperative DEL status prediction models via intratumoral heterogeneity analysis.
Materials And Methods: Clinical, pathological, and MRI imaging data of 139 PCNSL patients from two independent centers were collected.
Environ Monit Assess
September 2025
Department of Forestry Engineering, Federal University of Lavras (UFLA), Lavras, Minas Gerais State, Brazil.
In general, species on our planet are adapted to phenological patterns of vegetation, which are strongly influenced by various climatic and environmental factors that, when altered, can threaten biodiversity. Recent studies have utilized the spatiotemporal variability of vegetation to understand its dynamics, directly affecting biodiversity. Therefore, this research aimed to generate indices of temporal variability considering vegetation phenology and indices of spatial variability of vegetation to subsequently identify priority areas for biodiversity conservation in the Cerrado and Caatinga regions in Minas Gerais State, Brazil.
View Article and Find Full Text PDFProc Natl Acad Sci U S A
September 2025
Department of Integrative Biology, University of California, Berkeley, CA 94720-3140.
Microscale symbioses can be critical to ecosystem functions, but the mechanisms of these interactions in nature are often cryptic. Here, we use a combination of stable isotope imaging and tracing to reveal carbon (C) and nitrogen (N) exchanges among three symbiotic primary producers that fuel a salmon-bearing river food web. Bulk isotope analysis, nanoSIMS (secondary ion mass spectrometry) isotope imaging, and density centrifugation for quantitative stable isotope probing enabled quantification of organism-specific C- and N-fixation rates from the subcellular scale to the ecosystem.
View Article and Find Full Text PDFSci Total Environ
September 2025
Department of Geological Sciences and Geological Engineering, Queen's University, 99 University Ave, K7L 3N6 Kingston, Ontario, Canada.
Hyperspectral data have been overshadowed by multispectral data for studying algal blooms for decades. However, newer hyperspectral missions, including the recent Plankton, Aerosol, Cloud, ocean Ecosystem (PACE) Ocean Color Instrument (OCI), are opening the doors to accessible hyperspectral data, at spatial and temporal resolutions comparable to ocean color and multispectral missions. Simulation studies can help to understand the potential of these hyperspectral sensors prior to launch and without extensive field data collection.
View Article and Find Full Text PDFPLoS One
September 2025
Department of Computer Science, Durham University, Durham, United Kingdom.
Object identification has been widely used in several applications, utilising the annotated data with bounding boxes to specify each object's exact location and category in images and videos. However, relatively little research has been conducted on identifying plant species in their natural environments. Natural habitats play a crucial role in preserving biodiversity, ecological balance, and overall ecosystem health.
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