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Tuftelin Interacting Protein 11 (TFIP11) was identified as a critical human spliceosome assembly regulator, interacting with multiple proteins and localising in membrane-less organelles. However, a lack of structural information on TFIP11 limits the rationalisation of its biological role. TFIP11 is predicted as an intrinsically disordered protein (IDP), and more specifically concerning its N-terminal (N-TER) region. IDPs lack a defined tertiary structure, existing as a dynamic conformational ensemble, favouring protein-protein and protein-RNA interactions. IDPs are involved in liquid-liquid phase separation (LLPS), driving the formation of subnuclear compartments. Combining disorder prediction, molecular dynamics, and spectroscopy methods, this contribution shows the first evidence TFIP11 N-TER is a polyampholytic IDP, exhibiting a structural duality with the coexistence of ordered and disordered assemblies, depending on the ionic strength. Increasing the salt concentration enhances the protein conformational flexibility, presenting a more globule-like shape, and a fuzzier unstructured arrangement that could favour LLPS and protein-RNA interaction. The most charged and hydrophilic regions are the most impacted, including the G-Patch domain essential to TFIP11 function. This study gives a better understanding of the salt-dependent conformational behaviour of the N-TER TFIP11, supporting the hypothesis of the formation of different types of protein assembly, in line with its multiple biological roles.
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http://dx.doi.org/10.1016/j.ijbiomac.2024.134291 | DOI Listing |
J Phys Chem B
August 2025
School of Optoelectronic Materials and Technology, & Key Laboratory of Optoelectronic Chemical Materials and Devices, Ministry of Education, Jianghan University, Wuhan 430056, China.
The Lethal 7 (Let-7) miRNA family is attracting more and more attention in recent decades due to its capability in post-transcriptional regulation and the modulation of various physiological and pathological processes. Yet, the underlying mechanism that controls the conformation and biofunctions of Let-7 molecules during their translocation in and out of the cell membrane is still elusive. In the present study, the sum frequency generation vibrational spectroscopy (SFG-VS), a second-order nonlinear spectroscopic technique, was applied to examine the interfacial behavior of Let-7a at the lipid membrane interface.
View Article and Find Full Text PDFInt J Biol Macromol
September 2025
Key Laboratory of Geriatric Nutrition and Health, Ministry of Education, School of Food and Health, Beijing Technology and Business University, Beijing 100048, China. Electronic address:
This study investigated the synergistic effects of high-intensity ultrasound (HIU, 20 kHz, 13.4 W/cm, 3 min) and varying NaCl concentrations (0, 0.3, 0.
View Article and Find Full Text PDFInt J Biol Macromol
September 2025
Department of Chemistry, National Institute of Technology Nagaland, Chumukedima, Nagaland 797103, India. Electronic address:
Many bioactive compounds target DNA, making ligand-DNA binding studies essential for developing new therapeutics. These interactions provide insight into how small molecules can bind to DNA and inhibit processes like replication and transcription, influencing gene-expression. Ajmalicine (AJM), while extensively studied for its pharmacological properties, has not been fully elucidated in its nucleic acid(s) binding mode.
View Article and Find Full Text PDFExtremophiles
March 2025
Microbial Adaptation Laboratory, Department of Microbiology, Tripura University (A Central University), Agartala, Tripura, 799022, India.
Halophilic bacteria thrive in high-salt environments through structural modifications in their proteins. One such adaptation is seen in the DNA polymerase III beta subunit, which acts as a "sliding clamp" for the DNA polymerase III, the replication machinery's key enzyme. Like other halophilic proteins, DNA Pol III beta of Salinibacter ruber displays an increased concentration of acidic amino acids, intrinsically disordered regions, and a negatively charged surface.
View Article and Find Full Text PDFJ Chem Phys
January 2025
School of Biological Sciences, Nanyang Technological University, 60 Nanyang Drive, Singapore 637551, Singapore.
Eukaryotic DNA is packaged in the cell nucleus into chromatin, composed of arrays of DNA-histone protein octamer complexes, the nucleosomes. Over the past decade, it has become clear that chromatin structure in vivo is not a hierarchy of well-organized folded nucleosome fibers but displays considerable conformational variability and heterogeneity. In vitro and in vivo studies, as well as computational modeling, have revealed that attractive nucleosome-nucleosome interaction with an essential role of nucleosome stacking defines chromatin compaction.
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