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Neutrophils are innate immune cells and the first line of defense for the maintenance of homeostasis. However, our knowledge of the metabolic rewiring associated with their differentiation and immune stimulation is limited. Here, quantitative C-metabolic flux analysis was performed using HL-60 cells as the neutrophil model. A metabolic model for C-metabolic flux analysis of neutrophils was developed based on the accumulation of C in intracellular metabolites derived from C-labeled extracellular carbon sources and intracellular macromolecules. Aspartate and glutamate in the medium were identified as carbon sources that enter central carbon metabolism. Furthermore, the breakdown of macromolecules, estimated to be fatty acids and nucleic acids, was observed. Based on these results, a modified metabolic model was used for C-metabolic flux analysis of undifferentiated, differentiated, and lipopolysaccharide (LPS)-activated HL-60 cells. The glucose uptake rate and glycolytic flux decreased with differentiation, whereas the tricarboxylic acid (TCA) cycle flux remained constant. The addition of LPS to differentiated HL-60 cells activated the glucose uptake rate and pentose phosphate pathway (PPP) flux levels, resulting in an increased rate of total NADPH regeneration, which could be used to generate reactive oxygen species. The flux levels of fatty acid degradation and synthesis were also increased in LPS-activated HL-60 cells. Overall, this study highlights the quantitative metabolic alterations in multiple pathways via the differentiation and activation of HL-60 cells using C-metabolic flux analysis.
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http://dx.doi.org/10.1016/j.mec.2024.e00239 | DOI Listing |
mSystems
September 2025
Department of Biological Sciences and BioDiscovery Institute, University of North Texas, Denton, Texas, USA.
is a human fungal pathogen that survives and proliferates within phagocytic immune cells. To sustain growth in the nutrient-limited phagosome environment, the pathogenic yeast scavenges available carbon sources, which must be metabolized through central carbon metabolism for respiration and biomass synthesis. However, carbon metabolic pathways operating in the pathogenic yeast phase have not been extensively mapped.
View Article and Find Full Text PDFAnal Chem
August 2025
State Key Laboratory of Geomicrobiology and Environmental Changes, China University of Geosciences, Wuhan 430074, P. R. China.
Microalgae play a crucial role in geological processes on Earth, including carbon and nitrogen cycling and oxygen production. Microalgae are mostly unicellular organisms that exhibit considerable phenotypic diversity in response to environmental changes. Emerging methods for single-cell metabolite analysis offer new avenues for exploring microalgae-environmental interactions.
View Article and Find Full Text PDFMetab Eng
November 2025
Department of Bioinformatic Engineering, Graduate School of Information Science and Technology, The University of Osaka, 1-5 Yamadaoka, Suita, Osaka, 565-0871, Japan. Electronic address:
Adenosine triphosphate (ATP) regeneration by substrate-level phosphorylation is a general feature of cancer metabolism, even under normoxic conditions (aerobic glycolysis). However, it is unclear why cancer cells prefer inefficient aerobic glycolysis over the highly efficient process of oxidative phosphorylation for ATP regeneration. To investigate the metabolic principles underlying aerobic glycolysis, we performed C-metabolic flux analysis of 12 cultured cancer cell lines and explored the metabolic constraints required to reproduce the results using in silico metabolic simulations.
View Article and Find Full Text PDFbioRxiv
July 2025
Department of Neurology, Massachusetts General Hospital, Boston, MA, USA.
Glioblastoma (GBM) relies on fatty acid metabolism to sustain its aggressive growth. While the role of stearoyl-CoA desaturase-1 (SCD1) in GBM is established, the function of its brain-enriched isoform, SCD5, remains unexplored. Here, we demonstrate that SCD5 is essential for glioblastoma stem cell (GSC) maintenance and genomic stability, with elevated expression in GSCs that declines upon differentiation, underscoring its role in tumor initiation.
View Article and Find Full Text PDFInt J Biol Macromol
September 2025
State Key Laboratory of Microbial Diversity and Innovative Utilization, Institute of Microbiology, Chinese Academy of Sciences, Beijing, People's Republic of China; College of Life Science, University of Chinese Academy of Sciences, Beijing, People's Republic of China; Tianjin Institute of Industria
Polyhydroxyalkanoates (PHAs) are biodegradable plastics emerging as sustainable alternatives to petroleum-based plastics. Haloferax mediterranei has shown strong potential for large-scale production of poly(3-hydroxybutyrate-co-3-hydroxyvalerate) (PHBV) using cheap carbon sources as substrates. To facilitate rational strain engineering, we constructed the first genome-scale metabolic model for H.
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