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Photoacoustic imaging (PAI) has been applied to many biomedical applications over the past decades. However, the received PA signal usually suffers from poor SNR. Conventional solution of employing higher-power laser, or doing long-time signal averaging, may raise the system cost, time consumption, and tissue damage. Another strategy is de-noising algorithm design. In this paper, we propose a gradient-based adaptive wavelet de-noising method, which sets the energy gradient mutation point of low-frequency wavelet components as the threshold. We conducted simulation, ex-vivo and in-vivo experiments using acoustic-resolution PAM. The quality of de-noised PA image/signal by our proposed algorithm has improved by at least 30%, in comparison to the traditional signal denoising algorithms, which produces better contrast and clearer details. Moreover, it produces good results when dealing with multi-layer structures. The proposed de-noising method provides potential to improve the SNR of PA signal under single-shot low-power laser illumination for biomedical applications in vivo.
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http://dx.doi.org/10.1002/jbio.202300289 | DOI Listing |
NMR Biomed
October 2025
Department of Electronics and Communication Engineering, Kongunadu College of Engineering and Technology, Trichy, Tamil Nadu, India.
The abnormal or irregular growth of cells in regions of the human body that affects surrounding tissues is termed a tumor. Brain tumors are among the most dangerous and life-threatening types of tumors, arising from the abnormal growth of cells within the brain. However, existing detection methods often suffer from limitations, such as poor noise handling in MRI images, inaccurate segmentation, and low generalization across varying datasets.
View Article and Find Full Text PDFbioRxiv
August 2025
Gilbert S. Omenn Department of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, MI, USA.
Motivation: Modern genomic research is driven by next-generation sequencing experiments such as ChIP-seq, CUT&Tag, and CUT&RUN that generate coverage files for transcription factor binding, as well as ATAC-seq that yield coverage files for chromatin accessibility. Due to the inherent technical noise present in the experimental protocols, researchers need statistically rigorous and computational efficient methods to extract true biological signal from a mixture of signal and noise. However, existing approaches are often computationally demanding or require input or spike-in controls.
View Article and Find Full Text PDFMethods Mol Biol
August 2025
Genomics and Evolutionary Dynamics Laboratory, Centre for Evolution and Cancer, Institute of Cancer Research, London, UK.
The wealth of routinely processed formalin-fixed and paraffin-embedded (FFPE) cancer biopsies is potentially a tremendous resource for cancer genomics research. However, the presence of formalin-induced artifactual mutations in FFPE material can confound mutational analyses. Our de-noising algorithm, FFPEsig, removes FFPE-related artifactual mutations enabling the inference of biological mutational signatures.
View Article and Find Full Text PDFNetwork
July 2025
Department of CSE, Mangalam College of Engineering Ettumannur, Kottayam District, India.
Image reconstruction is a critical step in various applications, such as art restoration, medical image processing, and agriculture, but it faces challenges due to noise and mosaic artefacts. In this research, a novel approach is introduced for de-noising and de-mosaicking images to enhance image reconstruction quality. The proposed model consists of three main steps: detail layer extraction, image de-noising using an Efficient Generative Adversarial Network (E-GAN), and de-mosaicking using an Adaptive Gannet-based Residual DenseNet (AG_DenseResNet).
View Article and Find Full Text PDFIntroduction: Dry electroencephalography (EEG) allows for recording cortical activity in ecological scenarios with a high channel count, but it is often more prone to artifacts as compared to gel-based EEG. Spatial harmonic analysis (SPHARA) and ICA-based methods (Fingerprint and ARCI) have been separately used in previous studies for dry EEG de-noising and physiological artifact reduction. Here, we investigate if the combination of these techniques further improves EEG signal quality.
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