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Many-body dynamics of atoms such as glass dynamics is generally governed by complex (and sometimes unknown) physics laws. This challenges the construction of atom dynamics simulations that both (i) capture the physics laws and (ii) run with little computation cost. Here, based on graph neural network (GNN), we introduce an observation-based graph network (OGN) framework to "" to simulate complex glass dynamics solely from their static structure. By taking the example of molecular dynamics (MD) simulations, we successfully apply the OGN to predict atom trajectories evolving up to a few hundred timesteps and ranging over different families of complex atomistic systems, which implies that the atom dynamics is largely encoded in their static structure in disordered phases and, furthermore, allows us to explore the capacity of OGN simulations that is potentially generic to many-body dynamics. Importantly, unlike traditional numerical simulations, the OGN simulations bypass the numerical constraint of small integration timestep by a multiplier of ≥5 to conserve energy and momentum until hundreds of timesteps, thus leapfrogging the execution speed of MD simulations for a modest timescale.
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http://dx.doi.org/10.1039/d3mh00028a | DOI Listing |
Nano Lett
September 2025
School of Chemistry and Materials Science, Hunan Agricultural University, Changsha 410128, China.
Passivating detrimental defects is essential for improving perovskite solar cells (PSCs) performance. While hydrogen interstitials are often considered harmful, their role in defect passivation remains unclear. Using nonadiabatic molecular dynamics, we uncover a self-passivation mechanism between hydrogen (H) and bromine (Br) interstitials in all-inorganic CsPbBr perovskites.
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September 2025
Department of Biochemistry and Molecular Biology, Graduate School of Medicine, The University of Tokyo, Tokyo, Japan.
Macroautophagy/autophagy is an evolutionarily conserved process through which cells degrade cytoplasmic substances via autophagosomes. During the initiation of autophagosome formation, the ULK/Atg1 complex serves as a scaffold that recruits and regulates downstream ATG/Atg proteins and ATG9/Atg9-containing vesicles. Despite the essential role of the ULK/Atg1 complex, its components have changed during evolution; the ULK complex in mammals consists of ULK1 (or ULK2), RB1CC1, ATG13, and ATG101, whereas the Atg1 complex in the yeast lacks Atg101 but instead has Atg29 and Atg31 along with Atg17.
View Article and Find Full Text PDFPlant Genome
September 2025
Department of Agronomy, Iowa State University, Ames, Iowa, USA.
Crop growth rate is a critical physiological trait for forage and bioenergy crops like sorghum [Sorghum bicolor (L.) Moench], influencing overall crop productivity, particularly in photoperiod-sensitive (PS) types. Crop growth rate studies focus on either a physiological approach utilizing a few genotypes to analyze biomass accumulation or a genetic approach characterizing easily scorable proxy traits in larger populations.
View Article and Find Full Text PDFNano Lett
September 2025
Department of Physics, Columbia University, New York, New York 10027, United States.
Graphene-based photonic structures have emerged as fertile ground for the controlled manipulation of surface plasmon polaritons (SPPs), providing a two-dimensional platform with low optoelectronic losses. In principle, nanostructuring graphene can enable further confinement of nanolight─enhancing light-matter interactions in the form of SPP cavity modes. In this study, we engineer nanoscale plasmonic cavities composed of self-assembled C arrays on graphene.
View Article and Find Full Text PDFMater Horiz
September 2025
TU Delft, Netherlands.
Soft wearable sensors offer promising potential for advanced diagnostics, therapeutics, and human-machine interfaces. Unlike conventional devices that are bulky and rigid, often compromising skin integrity, comfort, and user compliance, soft wearable sensors are flexible, conformable, and better suited to the dynamic skin surface. This improved mechanical integration enhances signal fidelity and device performance, while also enabling safer, more comfortable, and continuous physiological monitoring in real-world environments.
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