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The MycoPins method described here is a rapid and affordable protocol to monitor early colonization events in communities of wood-inhabiting fungi in fine woody debris. It includes easy to implement field sampling techniques and sample processing, followed by data processing, and analysis of the development of early dead wood fungal communities. The method is based on fieldwork from a time series experiment on standard sterilized colonization targets followed by the metabarcoding analysis and automated molecular identification of species. This new monitoring method through its simplicity, moderate costs, and scalability paves a way for a broader and scalable project pipeline. MycoPins establishes a standard routine for research stations or regularly visited field sites for monitoring of fungal colonization of woody substrates. The routine uses widely available consumables and therefore presents a unifying method for monitoring of fungi of this type.
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http://dx.doi.org/10.3897/mycokeys.96.101033 | DOI Listing |
Infect Dis Clin North Am
September 2025
Department of Microbiology, Institute for Immunology and Immune Health, University of Pennsylvania Perelman School of Medicine, 303B Johnson Pavilion, 3610 Hamilton Walk, Philadelphia, PA 19104, USA.
Clostridioides difficile infection (CDI) remains a significant cause of infectious colitis in the United States. Susceptibility to CDI is associated with perturbation of the gut microbiota, the indigenous microbes in the gastrointestinal tract. Upon colonization, the production of toxins and the ability to produce spores for environmental dissemination contribute to C difficile pathogenicity.
View Article and Find Full Text PDFPestic Biochem Physiol
November 2025
College of Plant Protection, Northwest A&F University, Yangling, Shaanxi 712100, China. Electronic address:
Tomato Fusarium wilt, caused by the soil-borne pathogen Fusarium oxysporum f. sp. lycopersici (Fol), poses a significant threat to global tomato production, resulting in severe losses in both yield and quality.
View Article and Find Full Text PDFFungal Biol
October 2025
Engineering Bioprocess and Biotechnology Post-Graduation Program, Department of Bioprocess Engineering and Biotechnology, Federal University of Parana, Curitiba, Paraná, Brazil. Electronic address:
Lichens exemplify a unique symbiotic relationship between fungi and algae or cyanobacteria, where fungi (mycobionts) provide structural support, while algae or cyanobacteria (photobionts) provide nutrients. Recent discoveries in the order Chaetothyriales have led to the description of several lichenicolous species, underscoring an intricate relationship of some black yeast-like fungi with lichens. The present study aims to investigate public metagenomic data of lichens available in the SRA database, covering a total of 2888 samples.
View Article and Find Full Text PDFReprod Biomed Online
May 2025
Materno-fetal and Obstetrics Research Unit, Department Woman-Mother-Child, University Hospital of Lausanne, Lausanne, Switzerland; Faculty of Biology and Medicine, University of Lausanne, Lausanne, Switzerland. Electronic address:
Research Question: What is the composition of bacterial communities at various genital sites and are there potential interactions between partners' microbiota?
Design: This observational study involved metagenomic analyses of samples collected from male and female partners of couples undergoing fertility treatment. Samples included vaginal and penile swabs, as well as follicular fluid and semen, which were analysed using next-generation sequencing.
Results: The bacterial community profiles of different genital tract niches were distinct, niche-specific compositions, with female samples predominantly featuring Lactobacillus species and male samples displaying greater microbial diversity, including genital-specific and skin-associated taxa.
Int J Occup Saf Ergon
September 2025
Faculty of Sciences, Ain Shams University, Egypt.
Laboratory safety is a critical priority in educational institutions, particularly in microbiology laboratories where infectious disease diagnosis requires strict protocols. Contaminated personnel can unknowingly transmit pathogens beyond the laboratory, posing public health risks. This study explores strategies to enhance safety in a microbiology laboratory at an Egyptian university.
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