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Urinary tract infections are one of the most frequent bacterial diseases worldwide. UPECs are the most prominent group of bacterial strains among pathogens responsible for prompting such infections. As a group, these extra-intestinal infection-causing bacteria have developed specific features that allow them to sustain and develop in their inhabited niche of the urinary tract. In this study, we examined 118 UPEC isolates to determine their genetic background and antibiotic resistance. Moreover, we investigated correlations of these characteristics with the ability to form biofilm and to induce a general stress response. We showed that this strain collection expressed unique UPEC attributes, with the highest representation of FimH, SitA, Aer, and Sfa factors (100%, 92.5%, 75%, and 70%, respectively). According to CRA (Congo red agar) analysis, the strains particularly predisposed to biofilm formation represented 32.5% of the isolates. Those biofilm forming strains presented a significant ability to accumulate multi-resistance traits. Most notably, these strains presented a puzzling metabolic phenotype-they showed elevated basal levels of (p)ppGpp in the planktonic phase and simultaneously exhibited a shorter generation time when compared to non-biofilm-forming strains. Moreover, our virulence analysis showed these phenotypes to be crucial for the development of severe infections in the model.
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http://dx.doi.org/10.3390/ijms24043315 | DOI Listing |
mBio
August 2025
Department of Microbiology and Immunology, Vagelos College of Physicians and Surgeons, Columbia University, New York, New York, USA.
As rapidly growing bacteria begin to exhaust nutrients, their growth rate slows, ultimately leading to stasis or quiescence. Adaptation to nutrient limitation requires widespread metabolic remodeling that leads to lower cellular energy consumption. Examples of such changes include attenuated transcription of genes encoding ribosome components, in part mediated by the phosphorylated nucleotides guanosine tetra- and penta-phosphate, collectively called (p)ppGpp.
View Article and Find Full Text PDFPhysiol Plant
August 2025
Regional Centre for Horticultural Biodiversity, The National Institute of Horticultural Research, Skierniewice, Poland.
Plant homologs of bacterial RelA/SpoT proteins (RSH) metabolise guanosine tetraphosphate and guanosine pentaphosphate (ppGpp and pppGpp, respectively), which are hyperphosphorylated nucleotides (referred to as [p]ppGpp or 'alarmones of the stringent response'). These nucleotides regulate chloroplast transcription, photosynthesis, plant growth and stress responses. However, it is not yet clear at which particular stages of plant development they are produced, nor which of them are affected or regulated by these nucleotides (nor in what way), especially in plants outside the Brassicaceae family.
View Article and Find Full Text PDFNPJ Biofilms Microbiomes
August 2025
Department of Clinical Microbiology, Rigshospitalet, Copenhagen, Denmark.
(p)ppGpp is the master regulator of bacterial stress responses, orchestrating cellular physiology via the stringent response to promote survival and adaptation. In response to nutritional challenges and stress, (p)ppGpp extensively rewires the transcriptome. Here, we demonstrate that (p)ppGpp production in Pseudomonas aeruginosa is gradual and relative to stress severity, rather than binary (on/off).
View Article and Find Full Text PDFUnlabelled: The alarmone (p)ppGpp (ppGpp) accumulates in response to starvation and other stress, leading to inhibition of multiple biosynthetic pathways and, at high concentrations, suppression of bacterial growth. Growth suppression by ppGpp is implicated in the formation of persister cells, which survive antibiotic challenge only to regrow once the drug is removed. However, there is also evidence that low levels of ppGpp contribute to resistance to certain cell wall-active antibiotics in actively growing cells.
View Article and Find Full Text PDFInt J Mol Sci
June 2025
Department of Forest Products and Biotechnology, Kookmin University, 77 Jeongneungro, Seongbukgu, Seoul 02707, Republic of Korea.
Persister cells are a subset of bacterial cells that exhibit transient antibiotic tolerance without genetic resistance, contributing to the persistence of chronic infections. This study investigates the ability of diosgenin, a naturally occurring steroidal saponin, to inhibit persister cell formation in through metabolic suppression and membrane modulation. Diosgenin treatments at 80 µM and 160 µM significantly reduced persister cell survival under oxacillin, ciprofloxacin, and gentamicin stress, with reductions ranging from 82% to 94% after 3 h diosgenin pre-exposure.
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