98%
921
2 minutes
20
Over the last 25 years, biology has entered the genomic era and is becoming a science of 'big data'. Most interpretations of genomic analyses rely on accurate functional annotations of the proteins encoded by more than 500 000 genomes sequenced to date. By different estimates, only half the predicted sequenced proteins carry an accurate functional annotation, and this percentage varies drastically between different organismal lineages. Such a large gap in knowledge hampers all aspects of biological enterprise and, thereby, is standing in the way of genomic biology reaching its full potential. A brainstorming meeting to address this issue funded by the National Science Foundation was held during 3-4 February 2022. Bringing together data scientists, biocurators, computational biologists and experimentalists within the same venue allowed for a comprehensive assessment of the current state of functional annotations of protein families. Further, major issues that were obstructing the field were identified and discussed, which ultimately allowed for the proposal of solutions on how to move forward.
Download full-text PDF |
Source |
---|---|
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC9374478 | PMC |
http://dx.doi.org/10.1093/database/baac062 | DOI Listing |
Biotechnol Lett
September 2025
Shandong Provincial Engineering Research Center for Precision Nutrition and Healthy Elderly Care, Qilu Medical University, 1678 Renmin West Road, Zibo, 255300, People's Republic of China.
Fatty acid synthase (FAS) is one of the most important enzymes in lipid biosynthesis, which can catalyze the reaction of acetyl-CoA and malonyl-CoA to produce fatty acids. However, the structure, function, and molecular mechanism of FAS regulating lipid synthesis in the fungus Mucor circinelloides are unclear. In the present study, two encoding fas genes in the high lipid-producing strain WJ11 and low lipid-producing strain CBS277.
View Article and Find Full Text PDFMol Phylogenet Evol
September 2025
Laboratory of Biodiversity and Evolution of Protozoa, College of Life Sciences, Shaanxi Normal University, Xi'an 710119, China. Electronic address:
Early-branching eukaryotes are associated with the early branching events during eukaryogenesis. Understanding their genomic diversity and evolution can provide insights into the origin and speciation of eukaryotes. Ciliated protists (ciliates) are a group of early-branching unicellular eukaryotes with a high biodiversity, making them excellent models for evolutionary studies.
View Article and Find Full Text PDFInt J Biol Macromol
September 2025
Supercomputing Facility for Bioinformatics & Computational Biology (SCFBio) & Kusuma School of Biological Sciences, Indian Institute of Technology, Delhi, 110016, India; Department of Chemistry, Indian Institute of Technology, Delhi, 110016, India. Electronic address:
DNA is a dynamic molecule composed of numerous genic and regulatory elements that orchestrate cellular functions. Traditional methods often fail to provide accurate functional genome annotations because they do not effectively account for sequence variability within and across different organisms. To address this, we conducted an extensive genomic physical fingerprinting of ~4.
View Article and Find Full Text PDFJ Hazard Mater
September 2025
School of Chemistry and Materials Science, Jiangsu Normal University, Xuzhou 221116, PR China. Electronic address:
Microplastics (MPs) and the plastisphere they form pose substantial ecological risks in aquatic environments and wastewater treatment processes. As a unique niche, the evolution of plastisphere in anaerobic ammonium oxidation (anammox) systems remains poorly understood. This study investigated the physicochemical evolution of polyethylene terephthalate (PET) MPs and microbial succession within the plastisphere during a 30-day incubation with anammox granular sludge.
View Article and Find Full Text PDFJ Robot Surg
September 2025
Orlando Health Advanced Robotic Surgery Center, Orlando, FL, USA.
Teleproctoring offers a remote alternative to traditional surgical mentoring, addressing logistical barriers in robotic surgery education. We conducted a prospective trial to assess the feasibility and trainee perception of teleproctoring using the Proximie platform. Eighteen surgeons with limited robotic experience performed a standardized enterotomy closure on synthetic bowel models using the da Vinci Si system, while receiving real-time remote guidance from an expert located 2570 km away.
View Article and Find Full Text PDF