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Laser-induced breakdown spectroscopy is often combined with a multivariate black box model-such as support vector machines (SVMs)-to obtain desirable quantitative or qualitative results. This approach carries obvious risks when practiced in high-stakes applications. Moreover, the lack of understanding of a black-box model limits the user's ability to fine-tune the model. Thus, here we present four approaches to interpret SVMs through investigating which features the models consider important in the classification task of 19 algal and cyanobacterial species. The four feature importance metrics are compared with popular approaches to feature selection for optimal SVM performance. We report that the distinct feature importance metrics yield complementary and often comparable information. In addition, we identify our SVM model's bias towards features with a large variance, even though these features exhibit a significant overlap between classes. We also show that the linear and radial basis kernel SVMs weight the same features to the same degree.
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http://dx.doi.org/10.1016/j.aca.2021.339352 | DOI Listing |
Knee Surg Relat Res
September 2025
Florida Orthopaedic Institute, Gainesville, FL, 32607, USA.
Background: A clear understanding of minimal clinically important difference (MCID) and substantial clinical benefit (SCB) is essential for effectively implementing patient-reported outcome measurements (PROMs) as a performance measure for total knee arthroplasty (TKA). Since not achieving MCID and SCB may reflect suboptimal surgical benefit, the primary aim of this study was to use machine learning to predict patients who may not achieve the threshold-based outcomes (i.e.
View Article and Find Full Text PDFImmunol Res
September 2025
Department of Immunology and Allergy, Faculty of Medicine, Necmettin Erbakan University, Konya, Türkiye.
Background: Variants of uncertain significance (VUS) represent a major diagnostic challenge in the interpretation of genetic testing results, particularly in the context of inborn errors of immunity such as severe combined immunodeficiency (SCID). The inconsistency among computational prediction tools often necessitates expensive and time-consuming wet-lab analyses.
Objective: This study aimed to develop disease-specific, multi-class machine learning models using in silico scores to classify SCID-associated genetic variants and improve the interpretation of VUS.
Life Sci Alliance
November 2025
Graduate School of Science, Technology and Innovation, Kobe University, Kobe, Japan
Mass-based fingerprinting can characterize microorganisms; however, expansion of these methods to predict specific gene functions is lacking. Therefore, mass fingerprinting was developed to functionally profile a yeast knockout library. Matrix-assisted laser desorption/ionization time-of-flight (MALDI-TOF) fingerprints of 3,238 knockouts were digitized for correlation with gene ontology (GO).
View Article and Find Full Text PDFProg Neuropsychopharmacol Biol Psychiatry
September 2025
School of Mathematics and Statistics, Guangdong University of Foreign Studies, Guangzhou, PR China. Electronic address:
Background: Sexual dimorphism in human brain has garnered significant attention in neuroscience research. Although multiple investigations have examined sexual dimorphism in gray matter (GM) functional connectivity (FC), the research of white matter (WM) FC remains relatively limited.
Methods: Utilizing resting-state fMRI data from 569 healthy young adults, we investigated sexual dimorphism in the WM functional connectome.
Comp Biochem Physiol Part D Genomics Proteomics
September 2025
Chinese PLA Centers for Disease Control and Prevention, Beijing, China. Electronic address:
The transmission of mosquito-borne diseases is intrinsically linked to mosquito blood-feeding behavior, yet the metabolic adaptations of the midgut microbiota in response to blood meals remain poorly understood. This study aimed to characterize the structural and functional changes in the midgut microbiota of Aedes albopictus following blood feeding and to elucidate their potential physiological implications. In this study, we employed 16S rRNA gene amplification coupled with PacBio Sequel II sequencing to characterize shifts in the midgut microbiota of Aedes albopictus before and after blood feeding on mice.
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